Browse Element(s) Details


OsAffx.23752.1.S1_at

Description tigr:9629.m05009
TID=OsAffx.23752.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5168011/11hypothetical protein
LOC_Os01g170805/11transposon protein, putative, Mutator sub-class
LOC_Os05g062001/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51660OsAffx.11563.1.S1_at10/111+30022688..30023250hypothetical protein
LOC_Os01g51670Os.37243.1.S1_at11/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_x_at9/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_at1/111+30035223..30036213expressed protein
LOC_Os01g51680OsAffx.23752.1.S1_at11/111+30044626..30045193hypothetical protein
LOC_Os01g51690Os.30634.1.S1_at10/111+30047770..30049912WRKY DNA binding domain containing protein, expressed
LOC_Os01g51700Os.40181.1.S1_at11/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700Os.40181.2.S1_s_at10/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700OsAffx.11564.1.S1_at8/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51710Os.27635.3.A1_x_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710Os.27635.2.S1_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710OsAffx.20867.1.S1_x_at2/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51720OsAffx.11565.1.S1_x_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.2.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.1.S1_at11/111+30066970..30069374expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23752.1.S1_at--615--8611Chr01:30044694..30044718 (25 bp)
TGGTGACCTAGGCTTTGATGCCTTG
LOC_Os01g51680
OsAffx.23752.1.S1_at--966--8851Chr01:30044709..30044733 (25 bp)
TGATGCCTTGGCTGTGGTAGCCAAT
LOC_Os01g51680
OsAffx.23752.1.S1_at--1126--6951Chr01:30044725..30044749 (25 bp)
GTAGCCAATGGCCATGTACAGCAGA
LOC_Os01g51680
OsAffx.23752.1.S1_at--101--8751Chr01:30044739..30044763 (25 bp)
TGTACAGCAGAACGCCAACGCTAGT
LOC_Os01g51680
OsAffx.23752.1.S1_at--494--1411Chr01:30044747..30044771 (25 bp)
AGAACGCCAACGCTAGTGCTCTAGC
LOC_Os01g51680
OsAffx.23752.1.S1_at--827--4132Chr01:30044772..30044796 (25 bp)
CGCTGCTAGAACATTGCTGCCCAAT
LOC_Os01g51680
OsAffx.23752.1.S1_at--223--8232Chr01:30044811..30044835 (25 bp)
GGCAATGGAGTTCAACCTTCCTGTT
LOC_Os01g51680
OsAffx.23752.1.S1_at--161--1753Chr01:30044825..30044849 (25 bp)
ACCTTCCTGTTCTTCAAGTGCAAAG
LOC_Os01g51680
OsAffx.23752.1.S1_at--205--10511Chr01:30044837..30045048 (25 bp)
TTCAAGTGCAAAGCTGGCAGCTGCA
LOC_Os01g51680
OsAffx.23752.1.S1_at--1058--9712Chr01:30045055..30045079 (25 bp)
TCAAGAGCGGCTAGCAGCTTACCAG
LOC_Os01g51680
OsAffx.23752.1.S1_at--296--5873Chr01:30045091..30045115 (25 bp)
GAGCCAGTGCTCTAGCCATGGACAG
LOC_Os01g51680
Target Sequence 
TGGTGACCTAGGCTTTGATGCCTTGGCTGTGGTAGCCAATGGCCATGTACAGCAGAACGCCAACGCTAGTGCTCTAGCCG
CTGCTAGAACATTGCTGCCCAATGCTCCTCTTCCGGCGGCAATGGAGTTCAACCTTCCTGTTCTTCAAGTGCAAAGCTGG
CAGCTGCAGCAAGTTCAAGAGCGGCTAGCAGCTTACCAGCCATCCCAGGCGAGCCAGTGCTCTAGCCATGGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis