Browse Element(s) Details


OsAffx.23757.1.S1_at

Description tigr:9629.m05038
TID=OsAffx.23757.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g519708/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51920Os.13835.2.S2_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51920Os.13835.2.S3_a_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51920Os.13835.2.S1_a_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51930OsAffx.23756.1.S1_at10/111+30179099..30179906hypothetical protein
LOC_Os01g51930OsAffx.21539.1.S1_x_at2/111+30179099..30179906hypothetical protein
LOC_Os01g51940OsAffx.11568.2.S1_at11/111+30181508..30182541hypothetical protein
LOC_Os01g51950Os.46012.2.S1_x_at7/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.46012.3.S1_x_at5/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.27088.1.A1_x_at4/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51960OsAffx.11569.1.S1_at11/111+30195755..30196102hypothetical protein
LOC_Os01g51970OsAffx.23757.1.S1_at8/111+30198011..30200500hypothetical protein
LOC_Os01g51980Os.14115.1.S1_at11/111+30201333..30204331Allinase, C-terminal domain containing protein, expressed
LOC_Os01g51990OsAffx.2307.1.S1_at8/111+30205282..30207127AN1-like Zinc finger family protein
LOC_Os01g52000OsAffx.915.1.S1_at11/111+30208648..30212949retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g52010Os.27958.1.S1_at11/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.5347.1.S1_x_at10/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.4801.1.S1_x_at3/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010OsAffx.914.1.S1_x_at2/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23757.1.S1_at--1005--7331Chr01:30198042..30198066 (25 bp)
GTGCAGATGTGGAAGCATCCCAGCT
LOC_Os01g51970
OsAffx.23757.1.S1_at--968--4971Chr01:30198056..30198080 (25 bp)
GCATCCCAGCTGACGAGTAGGACAC
LOC_Os01g51970
OsAffx.23757.1.S1_at--474--6931Chr01:30198072..30198096 (25 bp)
GTAGGACACTGTTGACGCTGCGACT
LOC_Os01g51970
OsAffx.23757.1.S1_at--378--5691Chr01:30198093..30198117 (25 bp)
GACTTGCCGACAGGACTAAACCCGA
LOC_Os01g51970
OsAffx.23757.1.S1_at--31--8131Chr01:30198105..30198129 (25 bp)
GGACTAAACCCGACGATGAGCCCCA
LOC_Os01g51970
OsAffx.23757.1.S1_at--734--671Chr01:30198120..30198140 (21 bp)
ATGAGCCCCACAATGCCAATGAATT
LOC_Os01g51970
OsAffx.23757.1.S1_at--331--4391NONE
GCCAATGAATTGCTACTACCTGACA
NONE
OsAffx.23757.1.S1_at--241--511Chr01:30198771..30198795 (25 bp)
ATCGTCCACATCGTTGCATCTTCTG
LOC_Os01g51970
OsAffx.23757.1.S1_at--405--4971Chr01:30198786..30199080 (25 bp)
GCATCTTCTGTTGCACACAGTTACA
LOC_Os01g51970
OsAffx.23757.1.S1_at--500--1691NONE
ACCAATGTGTTCGTGAGCTTACACC
NONE
OsAffx.23757.1.S1_at--741--5891NONE
GAGCTTACACCAAGGAATTTCATGA
NONE
Target Sequence 
GTGCAGATGTGGAAGCATCCCAGCTGACGAGTAGGACACTGTTGACGCTGCGACTTGCCGACAGGACTAAACCCGACGAT
GAGCCCCACAATGCCAATGAATTGCTACTACCTGACAAAATATTGTTGGTGGTCACCATCGTCCACATCGTTGCATCTTC
TGTTGCACACAGTTACATAAATCTGGTTATTGAAATCCACTTCAATCACCAATGTGTTCGTGAGCTTACACCAAGGAATT
TCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis