Browse Element(s) Details


OsAffx.2378.1.S1_at

Description tigr:9629.m06040
TID=OsAffx.2378.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6136011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61310OsAffx.23881.1.S1_x_at11/111+35800544..35801182hypothetical protein
LOC_Os01g61320Os.8865.4.S1_at11/111+35804267..35806360expressed protein
LOC_Os01g61320Os.8865.4.S1_x_at11/111+35804267..35806360expressed protein
LOC_Os01g61320Os.8865.2.S1_x_at11/111+35804267..35806360expressed protein
LOC_Os01g61330Os.37113.1.S1_at11/111+35806920..35809034MSP domain containing protein, expressed
LOC_Os01g61340OsAffx.23882.1.S1_at10/111+35815856..35817124hypothetical protein
LOC_Os01g61350Os.24385.1.S1_at11/111+35818759..35819770Glutaredoxin family protein, expressed
LOC_Os01g61360OsAffx.2378.1.S1_at11/111+35822814..35823216hypothetical protein
LOC_Os01g61370Os.29834.2.S1_at10/111+35823833..35825262expressed protein
LOC_Os01g61380Os.5740.1.S1_at11/111+35825868..35828594Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g61390Os.34655.1.S1_at11/111+35828845..35831901transposon protein, putative, unclassified, expressed
LOC_Os01g61400Os.19035.1.S1_at10/111+35832362..35835369expressed protein
LOC_Os01g61410Os.47958.1.A1_x_at11/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61410Os.25236.1.S1_x_at10/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61420Os.47928.1.S2_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S3_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S1_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.27437.1.A1_x_at10/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61430Os.7716.1.S1_at11/111+35845527..35846372expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2378.1.S1_at--218--151Chr01:35823160..35823184 (25 bp)
ATTACCCTTCGAGTTGGTCACCAAT
LOC_Os01g61360
OsAffx.2378.1.S1_at--930--6051Chr01:35823150..35823174 (25 bp)
GAGTTGGTCACCAATTCATCTGCAT
LOC_Os01g61360
OsAffx.2378.1.S1_at--256--3151Chr01:35823138..35823162 (25 bp)
AATTCATCTGCATTTCGCTTGGAGA
LOC_Os01g61360
OsAffx.2378.1.S1_at--716--9051Chr01:35823130..35823154 (25 bp)
TGCATTTCGCTTGGAGAAAGACTGC
LOC_Os01g61360
OsAffx.2378.1.S1_at--369--5571Chr01:35823115..35823139 (25 bp)
GAAAGACTGCCTTGTGCTCCGCTGT
LOC_Os01g61360
OsAffx.2378.1.S1_at--1045--3611Chr01:35823105..35823129 (25 bp)
CTTGTGCTCCGCTGTGCACTTGTGC
LOC_Os01g61360
OsAffx.2378.1.S1_at--716--511Chr01:35822987..35823099 (25 bp)
ATCGTTGCTTCCAGCGAGGTGTGGT
LOC_Os01g61360
OsAffx.2378.1.S1_at--1042--10671Chr01:35822979..35823091 (25 bp)
TTCCAGCGAGGTGTGGTCTGTTCAG
LOC_Os01g61360
OsAffx.2378.1.S1_at--174--5611Chr01:35822933..35822957 (25 bp)
GACAACGTCCGCTACCTCGTATGCA
LOC_Os01g61360
OsAffx.2378.1.S1_at--993--7331Chr01:35822895..35822919 (25 bp)
GTGCAGGGAGACATGCCAGGATCAC
LOC_Os01g61360
OsAffx.2378.1.S1_at--1162--3471Chr01:35822879..35822903 (25 bp)
CAGGATCACGGCAACGTCGACGGCC
LOC_Os01g61360
Target Sequence 
ATTACCCTTCGAGTTGGTCACCAATTCATCTGCATTTCGCTTGGAGAAAGACTGCCTTGTGCTCCGCTGTGCACTTGTGC
TGCTCATCGTTGCTTCCAGCGAGGTGTGGTCTGTTCAGGGTGAGGACTGCTGGAACGTGGACAACGTCCGCTACCTCGTA
TGCACCCACACCCACAAGTGCAGGGAGACATGCCAGGATCACGGCAACGTCGACGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis