Browse Element(s) Details


OsAffx.23798.1.S1_s_at

Description gb:NM_191290.1
DB_XREF= gi:34909663
GEN=OJ1414_E05.9
TID=OsAffx.23798.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1414_E05.9 (OJ1414_E05.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5521011/11F-box domain containing protein
LOC_Os04g131601/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55170Os.50721.1.S1_at11/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55170Os.9803.1.S1_a_at10/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55180OsAffx.11610.2.S1_at11/111+32070709..32075429hypothetical protein
LOC_Os01g55190Os.8252.1.S1_s_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.8252.1.S1_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.37713.1.S1_at1/111+32076028..32080215expressed protein
LOC_Os01g55200Os.33391.1.S1_at11/111+32088071..32090735Potassium channel KAT1, putative, expressed
LOC_Os01g55200Os.33391.2.S1_x_at11/111+32088071..32090735Potassium channel KAT1, putative, expressed
LOC_Os01g55210OsAffx.23798.2.S1_at11/111+32091409..32091951F-box domain containing protein
LOC_Os01g55210OsAffx.23798.1.S1_s_at11/111+32091409..32091951F-box domain containing protein
LOC_Os01g55220NANA1+32093478..32093690hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23798.1.S1_s_at--419--872Chr04:7242388..7242412 (25 bp)
ATGGCGGCCGAGTTCCGGCGGCGCG
LOC_Os04g13160
OsAffx.23798.1.S1_s_at--142--5791Chr01:32091900..32091924 (25 bp)
GACGACCCAGATGATGTGTATGGGA
LOC_Os01g55210
OsAffx.23798.1.S1_s_at--52--791Chr01:32091887..32091911 (25 bp)
ATGTGTATGGGACCGTGGCACGCGT
LOC_Os01g55210
OsAffx.23798.1.S1_s_at--81--4071Chr01:32091754..32091778 (25 bp)
CGAGCTCCTCAGCAAGGTCGTCTCC
LOC_Os01g55210
OsAffx.23798.1.S1_s_at--876--1751Chr01:32091728..32091752 (25 bp)
ACCTCCCCGTCAAGGATGTCGCGCG
LOC_Os01g55210
OsAffx.23798.1.S1_s_at--1037--1931Chr01:32091553..32091577 (25 bp)
ACTGACCTCCGGACCAGTTGACGGT
LOC_Os01g55210
OsAffx.23798.1.S1_s_at--283--5851Chr01:32091542..32091566 (25 bp)
GACCAGTTGACGGTTGCCCAATAGC
LOC_Os01g55210
OsAffx.23798.1.S1_s_at--122--10751Chr01:32091536..32091560 (25 bp)
TTGACGGTTGCCCAATAGCCTGGTG
LOC_Os01g55210
OsAffx.23798.1.S1_s_at--64--10711Chr01:32091529..32091553 (25 bp)
TTGCCCAATAGCCTGGTGCTCTCTG
LOC_Os01g55210
OsAffx.23798.1.S1_s_at--63--4551Chr01:32091456..32091480 (25 bp)
GCCCTGTCCCGGTGCAAGCAGAAGC
LOC_Os01g55210
OsAffx.23798.1.S1_s_at--1037--3871Chr01:32091453..32091477 (25 bp)
CTGTCCCGGTGCAAGCAGAAGCGGC
LOC_Os01g55210
Target Sequence 
ATGGCGGCCGAGTTCCGGCGGCGCGGGGACGACCCAGATGATGTGTATGGGACCGTGGCACGCGTGCTCTCCTACATCCA
CTACACCCTCCCCAGCCCGCCCGTCTCCGCTACCACACGCCTCTGCGCACTTACCCCGCACGACGTCGTCGACCGCATCA
GCACCCTCCCTGACGAGCTCCTCAGCAAGGTCGTCTCCCACCTCCCCGTCAAGGATGTCGCGCGCACTACCGCTGGAGCC
CGGCCCGCTCCATGGCCTGCATGGCCGGTCCCGCCTTCCTCACTGACCTCCGGACCAGTTGACGGTTGCCCAATAGCCTG
GTGCTCTCTGCCGGAACCACCTCATCACCTCCTCGGGCCATCTTCATCTACCTCCTACGCCCTGTCCCGGTGCAAGCAGA
AGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23798.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis