Browse Element(s) Details


OsAffx.23883.1.S1_x_at

Description tigr:9629.m06052
TID=OsAffx.23883.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6147011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61440Os.32153.1.S1_at10/111+35852376..35854441expressed protein
LOC_Os01g61440Os.32153.2.S1_x_at6/111+35852376..35854441expressed protein
LOC_Os01g61450OsAffx.2379.1.S1_at9/111+35857592..35859404hypothetical protein
LOC_Os01g61450Os.55478.1.S1_at2/111+35857592..35859404hypothetical protein
LOC_Os01g61460Os.20717.1.S1_at11/111+35865324..35871179expressed protein
LOC_Os01g61460Os.46498.1.S1_at1/111+35865324..35871179expressed protein
LOC_Os01g61470OsAffx.23883.1.S1_x_at11/111+35874750..35875319Zinc finger, C3HC4 type family protein
LOC_Os01g61480Os.38423.1.S1_at11/111+35884997..35886074Transcription factor LAX PANICLE, putative, expressed
LOC_Os01g61490OsAffx.32166.1218.S1_x_at2/111+35895500..35903068retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006461biological_processprotein complex assembly
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23883.1.S1_x_at--6--7231Chr01:35875235..35875259 (25 bp)
GTCGACGACGGCAACTTCGCGGTGC
LOC_Os01g61470
OsAffx.23883.1.S1_x_at--790--3471Chr01:35875036..35875060 (25 bp)
CAGGTTCAGCCTCATCGGTGACCGG
LOC_Os01g61470
OsAffx.23883.1.S1_x_at--523--8931Chr01:35875018..35875042 (25 bp)
TGACCGGCCTCGACGACGCGACGAT
LOC_Os01g61470
OsAffx.23883.1.S1_x_at--1067--1851Chr01:35875006..35875030 (25 bp)
ACGACGCGACGATAGCGAGCATGCC
LOC_Os01g61470
OsAffx.23883.1.S1_x_at--179--1891Chr01:35874998..35875022 (25 bp)
ACGATAGCGAGCATGCCCGTGGCGC
LOC_Os01g61470
OsAffx.23883.1.S1_x_at--1158--4071Chr01:35874991..35875015 (25 bp)
CGAGCATGCCCGTGGCGCTGTACCG
LOC_Os01g61470
OsAffx.23883.1.S1_x_at--1033--8471Chr01:35874961..35874985 (25 bp)
TGGCGTCGGCTGCAGGTGATGGCGA
LOC_Os01g61470
OsAffx.23883.1.S1_x_at--905--2891Chr01:35874881..35874905 (25 bp)
AAGGTGAAGGCGCTGCCGCTGTGCG
LOC_Os01g61470
OsAffx.23883.1.S1_x_at--709--10651Chr01:35874848..35874872 (25 bp)
TTCCACCCGGAGTGCGTGGACGCGT
LOC_Os01g61470
OsAffx.23883.1.S1_x_at--648--4511Chr01:35874810..35874834 (25 bp)
GCCGAGCTGCCCTCTGTGCAGGAGC
LOC_Os01g61470
OsAffx.23883.1.S1_x_at--389--9171Chr01:35874803..35874827 (25 bp)
TGCCCTCTGTGCAGGAGCTCGCTTC
LOC_Os01g61470
Target Sequence 
GTCGACGACGGCAACTTCGCGGTGCGCGGCCGCGCGGTGCCGCTCCTCGTGGCGCTCCTCTTCGTCCTCGTCTGCTTCGT
CGCCGTCTCCCTCTACCTCCGCTGGGCGTGCCACTGCCACCGCTACGGCCGCGACACGACGCCGATGCCCGCCACCACCA
GCTCCGGCTTCTCCTCGTCGCACGCTGCGGCGACCGCGCCAGGTTCAGCCTCATCGGTGACCGGCCTCGACGACGCGACG
ATAGCGAGCATGCCCGTGGCGCTGTACCGGGCCGTGGCGTCGGCTGCAGGTGATGGCGACGACGGCGGCGCCGCGCAGTG
CTCGATATGCCTCGGGGAGTTCGAAGAGGGCGAGAAGGTGAAGGCGCTGCCGCTGTGCGGGCACGGGTTCCACCCGGAGT
GCGTGGACGCGTGGCTCCGCTCGCGGCCGAGCTGCCCTCTGTGCAGGAGCTCGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23883.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis