Browse Element(s) Details


OsAffx.23929.1.S1_at

Description tigr:9629.m06527
TID=OsAffx.23929.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6582011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65780Os.5334.2.S1_a_at11/111+38523871..38529461secondary cell wall-related glycosyltransferase family 8, putative, expressed
LOC_Os01g65790Os.32182.1.S1_at8/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65790OsAffx.1382.1.S1_x_at3/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65800Os.35603.1.S1_at11/111+38539707..38543983expressed protein
LOC_Os01g65810OsAffx.11747.2.A1_at11/111+38545985..38547304hypothetical protein
LOC_Os01g65820OsAffx.23929.1.S1_at11/111+38547994..38548583hypothetical protein
LOC_Os01g65830Os.9534.1.S1_at11/111+38551270..38552844Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g65840Os.34903.1.S1_at11/111+38553274..38555289pentatricopeptide, putative, expressed
LOC_Os01g65850OsAffx.23930.1.S1_at11/111+38555661..38564077Type III restriction enzyme, res subunit family protein
LOC_Os01g65860Os.29810.1.S1_at11/111+38565328..38567154ANTH domain containing protein, expressed
LOC_Os01g65870OsAffx.2418.1.S1_at9/111+38572676..38573471hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23929.1.S1_at--364--3331Chr01:38548024..38548048 (25 bp)
CACTCCGGCACTAGTGCTTGGAGGT
LOC_Os01g65820
OsAffx.23929.1.S1_at--768--8451Chr01:38548051..38548075 (25 bp)
TGGCCTCGTCGTTGGATCGGTGCAA
LOC_Os01g65820
OsAffx.23929.1.S1_at--1055--7191Chr01:38548058..38548082 (25 bp)
GTCGTTGGATCGGTGCAACCATGAT
LOC_Os01g65820
OsAffx.23929.1.S1_at--1050--6611Chr01:38548061..38548085 (25 bp)
GTTGGATCGGTGCAACCATGATCCA
LOC_Os01g65820
OsAffx.23929.1.S1_at--509--1971Chr01:38548458..38548482 (25 bp)
ACTGACAACCTTGAATTGCATGTGC
LOC_Os01g65820
OsAffx.23929.1.S1_at--355--10751Chr01:38548468..38548492 (25 bp)
TTGAATTGCATGTGCCCCAGCGGAT
LOC_Os01g65820
OsAffx.23929.1.S1_at--1119--10711Chr01:38548473..38548497 (25 bp)
TTGCATGTGCCCCAGCGGATCCAAC
LOC_Os01g65820
OsAffx.23929.1.S1_at--670--4751Chr01:38548499..38548523 (25 bp)
GCTGACACACTCAATGGCAAAAGGA
LOC_Os01g65820
OsAffx.23929.1.S1_at--869--3271Chr01:38548506..38548530 (25 bp)
CACTCAATGGCAAAAGGAGGGATTA
LOC_Os01g65820
OsAffx.23929.1.S1_at--908--6131Chr01:38548522..38548546 (25 bp)
GAGGGATTAGGCTATCAGTGCACTT
LOC_Os01g65820
OsAffx.23929.1.S1_at--652--6551Chr01:38548526..38548550 (25 bp)
GATTAGGCTATCAGTGCACTTGACG
LOC_Os01g65820
Target Sequence 
CACTCCGGCACTAGTGCTTGGAGGTGGTGGCCTCGTCGTTGGATCGGTGCAACCATGATCCAAGTTTGGGGTACTGACAA
CCTTGAATTGCATGTGCCCCAGCGGATCCAACCGCTGACACACTCAATGGCAAAAGGAGGGATTAGGCTATCAGTGCACT
TGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis