Browse Element(s) Details


OsAffx.23980.1.S1_at

Description tigr:9629.m06874
TID=OsAffx.23980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6917411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69120Os.27831.1.S1_at10/111+40502554..40509529expressed protein
LOC_Os01g69130Os.19079.1.S1_at11/111+40509609..40517730Dynamin-related protein 3A, putative, expressed
LOC_Os01g69140Os.55111.1.S1_at2/111+40519858..40521570regulatory protein, putative, expressed
LOC_Os01g69150NANA1+40523514..40524047transposon protein, putative, unclassified
LOC_Os01g69160OsAffx.23979.1.S1_at11/111+40527847..40530540regulatory protein, putative
LOC_Os01g69174OsAffx.11798.1.S1_at11/111+40531961..40533731hypothetical protein
LOC_Os01g69174OsAffx.23980.1.S1_at11/111+40531961..40533731hypothetical protein
LOC_Os01g69190Os.53267.1.S1_at11/111+40538046..40540330regulatory protein, putative, expressed
LOC_Os01g69200OsAffx.11799.1.S1_at11/111+40541950..40543266regulatory protein, putative, expressed
LOC_Os01g69210OsAffx.23981.1.S1_at11/111+40547968..40556378Mannosyl oligosaccharide glucosidase family protein, expressed
LOC_Os01g69220Os.50010.1.S1_at11/111+40557066..40560061exostosin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23980.1.S1_at--644--8231Chr01:40531991..40532015 (25 bp)
GGCAACATGAGTGGCCATTATTACC
LOC_Os01g69174
OsAffx.23980.1.S1_at--1026--8431Chr01:40532003..40532027 (25 bp)
GGCCATTATTACCATCACCTGACCT
LOC_Os01g69174
OsAffx.23980.1.S1_at--932--151Chr01:40532007..40532031 (25 bp)
ATTATTACCATCACCTGACCTCCTT
LOC_Os01g69174
OsAffx.23980.1.S1_at--802--9151Chr01:40532034..40532058 (25 bp)
TCCTAGGAGCTGTTCTGCCCACCGT
LOC_Os01g69174
OsAffx.23980.1.S1_at--1029--7371Chr01:40532087..40532111 (25 bp)
GTGAGCGAGCGGCTGCCCACCATAT
LOC_Os01g69174
OsAffx.23980.1.S1_at--269--8331Chr01:40532097..40532121 (25 bp)
GGCTGCCCACCATATCGAGCTTGGG
LOC_Os01g69174
OsAffx.23980.1.S1_at--489--3371Chr01:40532104..40532128 (25 bp)
CACCATATCGAGCTTGGGCAATGGA
LOC_Os01g69174
OsAffx.23980.1.S1_at--831--4931Chr01:40532115..40532139 (25 bp)
GCTTGGGCAATGGAGCTCTCGTGAT
LOC_Os01g69174
OsAffx.23980.1.S1_at--434--2971Chr01:40532123..40532147 (25 bp)
AATGGAGCTCTCGTGATCGGTGGCC
LOC_Os01g69174
OsAffx.23980.1.S1_at--970--3771Chr01:40532132..40532156 (25 bp)
CTCGTGATCGGTGGCCGTGCTACTG
LOC_Os01g69174
OsAffx.23980.1.S1_at--431--5311Chr01:40532162..40532186 (25 bp)
GAAGGTGGTGACCTCACAGGCGTCG
LOC_Os01g69174
Target Sequence 
GGCAACATGAGTGGCCATTATTACCATCACCTGACCTCCTTCCTCCTAGGAGCTGTTCTGCCCACCGTGCTGCTCTTCTT
CCTCGCCTCCGACCGGGTGAGCGAGCGGCTGCCCACCATATCGAGCTTGGGCAATGGAGCTCTCGTGATCGGTGGCCGTG
CTACTGCTCGAGAAGGTGGTGACCTCACAGGCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis