Browse Element(s) Details


OsAffx.24046.7.S1_x_at

Description tigr:9629.m02685
TID=OsAffx.24046.7
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2804011/11hAT family dimerisation domain containing protein
LOC_Os01g568309/11hAT family dimerisation domain containing protein
LOC_Os08g189608/11Transposase, putative
LOC_Os06g147306/11Transposase, putative
LOC_Os02g010405/11hypothetical protein
LOC_Os12g279804/11hAT family dimerisation domain containing protein
LOC_Os06g073704/11hAT family dimerisation domain containing protein
LOC_Os05g400904/11hAT family dimerisation domain containing protein
LOC_Os07g178504/11hAT family dimerisation domain containing protein
LOC_Os07g177803/11hAT family dimerisation domain containing protein
LOC_Os04g487803/11Transposase, putative
LOC_Os01g153803/11hAT family dimerisation domain containing protein
LOC_Os06g124803/11hAT family dimerisation domain containing protein, expressed
LOC_Os01g050303/11hAT family dimerisation domain containing protein
LOC_Os01g538703/11hAT family dimerisation domain containing protein
LOC_Os06g074403/11hAT family dimerisation domain containing protein
LOC_Os01g109103/11hAT family dimerisation domain containing protein
LOC_Os07g393402/11hAT family dimerisation domain containing protein
LOC_Os01g384402/11hAT family dimerisation domain containing protein
LOC_Os05g262002/11hypothetical protein
LOC_Os09g042801/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28000Os.46314.2.S1_x_at3/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.940.1.S1_x_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.4303.1.S1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.22896.1.S1_x_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000Os.10731.2.A1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.9762.1.S1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.22699.1.S1_x_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.11259.1.S1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28010Os.45173.1.S1_x_at2/111+15990061..15991273hypothetical protein
LOC_Os01g28020NANA1+15993124..15995924hypothetical protein
LOC_Os01g28030Os.22884.1.A1_at10/111+15999516..16004495Peroxidase 24 precursor, putative, expressed
LOC_Os01g28040OsAffx.24046.7.S1_x_at11/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28040OsAffx.24046.3.S1_x_at6/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28040OsAffx.24046.5.S1_x_at3/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28040Os.56292.1.S1_x_at2/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28040OsAffx.24046.2.S1_x_at2/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28040Os.56292.1.S1_at1/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28050OsAffx.8891.1.S1_at6/111+16020025..16020822hypothetical protein
LOC_Os01g28060Os.46306.1.S1_x_at6/111+16030986..16037496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28060OsAffx.940.1.S1_x_at1/111+16030986..16037496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28070NANA1+16038018..16039315transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24046.7.S1_x_at--625--77520Chr07:23565959..23565983 (25 bp)
GGTGTTTATTATCCAACATCTCCAT
LOC_Os07g39340
OsAffx.24046.7.S1_x_at--186--5599Chr06:8298842..8298866 (25 bp)
GAAATGTTGTTGTTCCCATGAAAAG
LOC_Os06g14730
OsAffx.24046.7.S1_x_at--814--3314Chr06:8299151..8299175 (25 bp)
CACTTGGACATGGTGCTGGTGCCAG
LOC_Os06g14730
OsAffx.24046.7.S1_x_at--1056--1432Chr08:11300160..11300282 (25 bp)
AGAACCTGGACTTGGTGCTGGTGCC
LOC_Os08g18960
OsAffx.24046.7.S1_x_at--14--9473Chr01:33150904..33150928 (25 bp)
TCTGGACTTGGTGCTGGTCCATTTT
LOC_Os01g56830
OsAffx.24046.7.S1_x_at--605--975Chr06:8299210..8299234 (25 bp)
AGGAGAACTTCTGCTACTGCTTTGA
LOC_Os06g14730
OsAffx.24046.7.S1_x_at--297--10754Chr01:33150982..33151006 (25 bp)
TTGAATGCCTCTGAGTTGTCTGCCT
LOC_Os01g56830
OsAffx.24046.7.S1_x_at--483--7171Chr01:16008316..16008340 (25 bp)
GTCTGCCTATCTTGACTGTGACATT
LOC_Os01g28040
OsAffx.24046.7.S1_x_at--1029--254Chr06:8299328..8299352 (25 bp)
ATATCCTAAACTGGTGGCATGAGCA
LOC_Os06g14730
OsAffx.24046.7.S1_x_at--495--57316Chr06:3544481..3544504 (24 bp)
GACTGTTCCTGTTTCTACTATATCG
LOC_Os06g07370
OsAffx.24046.7.S1_x_at--491--48921Chr07:23566707..23566730 (24 bp)
GCTTTTAGCTTAACTGGCAGGATCA
LOC_Os07g39340
Target Sequence 
GGTGTTTATTATCCAACATCTCCATTAATTATGCATCACATTCTTGAGATTGCTGGACATCTTAACACTTATGAGAATGA
TATTAACTTTAGAAATGTTGTTGTTCCCATGAAAAGCAGTACTGCTAGTAAGAAAAAGACAGCCTGGGGAAAGATTTTTG
GTGCCAGTGATGCACTTGGACATGGTGCTGGTGCCAGTCCAGAACCTGGACTTGGTGCTGGTGCCAGTCCAGGTTCTGGA
CTTGGTGCTGGTCCATTTTCCAGGAGAACTTCTGCTACTGCTTTGATTCAAGCTGTTTCTTCTAATGCTAACTTGAATGC
CTCTGAGTTGTCTGCCTATCTTGACTGTGACATTGTCAACCAATTCGACGATGACTTCAATATCCTAAACTGGTGGCATG
AGCACAAACACACATATCCTATTATGTCCATATTAGCTAGAGATGTCTTGACTGTTCCTGTTTCTACTATATCGTCGGAG
TCTGCTTTTAGCTTAACTGGCAGGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24046.7.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis