Browse Element(s) Details


OsAffx.24054.1.S1_at

Description tigr:9630.m00080
TID=OsAffx.24054.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g018108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01760OsAffx.2480.1.S1_at10/112+420812..424850diphosphomevalonate decarboxylase family protein
LOC_Os02g01760OsAffx.16011.1.S1_at1/112+420812..424850diphosphomevalonate decarboxylase family protein
LOC_Os02g01770Os.9094.1.S1_at7/112+427311..428489hypothetical protein
LOC_Os02g01780OsAffx.24052.1.S1_at11/112+430227..430724hypothetical protein
LOC_Os02g01790Os.9094.1.S1_at11/112+432969..436157expressed protein
LOC_Os02g01790Os.9094.1.S2_s_at11/112+432969..436157expressed protein
LOC_Os02g01790Os.9094.1.S2_at8/112+432969..436157expressed protein
LOC_Os02g01800OsAffx.24926.1.S1_x_at11/112+442288..446000Leucine Rich Repeat family protein, expressed
LOC_Os02g01800OsAffx.24926.2.S1_at2/112+442288..446000Leucine Rich Repeat family protein, expressed
LOC_Os02g01810OsAffx.24054.1.S1_x_at8/112+448105..449790hypothetical protein
LOC_Os02g01810OsAffx.24054.1.S1_at8/112+448105..449790hypothetical protein
LOC_Os02g01820OsAffx.11993.2.S1_at11/112+451471..454309ABC transporter, putative
LOC_Os02g01820OsAffx.11993.2.S1_s_at10/112+451471..454309ABC transporter, putative
LOC_Os02g01830Os.52249.2.S1_x_at10/112+458781..459988expressed protein
LOC_Os02g01830Os.51370.1.S1_x_at2/112+458781..459988expressed protein
LOC_Os02g01840NANA2+460866..464983retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01850OsAffx.2482.1.S1_at11/112+470490..471675hypothetical protein
LOC_Os02g01850Os.57126.1.S1_at3/112+470490..471675hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24054.1.S1_at--1101--7531NONE
GTGGCCCTTTCGCTGAACATGGAGT
NONE
OsAffx.24054.1.S1_at--398--8471NONE
TGGCCCTTTCGCTGAACATGGAGTT
NONE
OsAffx.24054.1.S1_at--926--7771Chr02:448819..448843 (25 bp)
GGTCCCGACGGGTCTCACAATCCTA
LOC_Os02g01810
OsAffx.24054.1.S1_at--458--4211Chr02:448815..448839 (25 bp)
CCGACGGGTCTCACAATCCTACAGT
LOC_Os02g01810
OsAffx.24054.1.S1_at--619--4091Chr02:448814..448838 (25 bp)
CGACGGGTCTCACAATCCTACAGTC
LOC_Os02g01810
OsAffx.24054.1.S1_at--864--5751Chr02:448813..448837 (25 bp)
GACGGGTCTCACAATCCTACAGTCT
LOC_Os02g01810
OsAffx.24054.1.S1_at--39--1931Chr02:448812..448836 (25 bp)
ACGGGTCTCACAATCCTACAGTCTC
LOC_Os02g01810
OsAffx.24054.1.S1_at--1090--7691Chr02:448810..448834 (25 bp)
GGGTCTCACAATCCTACAGTCTCGT
LOC_Os02g01810
OsAffx.24054.1.S1_at--498--7811Chr02:448809..448833 (25 bp)
GGTCTCACAATCCTACAGTCTCGTC
LOC_Os02g01810
OsAffx.24054.1.S1_at--301--9531Chr02:448807..448831 (25 bp)
TCTCACAATCCTACAGTCTCGTCCG
LOC_Os02g01810
OsAffx.24054.1.S1_at--862--331NONE
ATACATGCCGACAGGTCGACACGGA
NONE
Target Sequence 
GTGGCCCTTTCGCTGAACATGGAGTTGGATATGGTAGTGGTCCCGACGGGTCTCACAATCCTACAGTCTCGTCCGTGCAT
GGCAACCAATACATGCCGACAGGTCGACACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis