Browse Element(s) Details


OsAffx.24129.1.S1_at

Description tigr:9630.m00568
TID=OsAffx.24129.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=uncharacterized plant-specific domain TIGR01627, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0638010/11uncharacterized plant-specific domain TIGR01627 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06330OsAffx.24128.1.S1_s_at11/112+3163942..3165032AP2 domain containing protein, expressed
LOC_Os02g06340Os.24778.1.S1_at11/112+3166615..3170814EH-domain containing protein 1, putative, expressed
LOC_Os02g06350OsAffx.18139.2.S1_at10/112+3171932..3174989hypothetical protein
LOC_Os02g06350Os.55379.1.S1_x_at1/112+3171932..3174989hypothetical protein
LOC_Os02g06360Os.7064.1.S1_s_at11/112+3179627..3182762KpsF/GutQ family protein, expressed
LOC_Os02g06370Os.32450.1.S1_at10/112+3182870..3187022DNA-binding protein, putative, expressed
LOC_Os02g06380OsAffx.24129.1.S1_at10/112+3188102..3190109uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os02g06390Os.5009.1.S1_at10/112+3191320..3194131expressed protein
LOC_Os02g06400Os.49870.1.S1_at11/112+3197172..3203165Plant protein family protein, expressed
LOC_Os02g06410Os.55564.1.S1_at11/112+3204084..3206330CBS domain containing protein, expressed
LOC_Os02g06420OsAffx.24130.1.S1_x_at11/112+3207497..3208306hypothetical protein
LOC_Os02g06430Os.7750.1.S1_at11/112+3212390..3216632expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24129.1.S1_at--386--7551Chr02:3189397..3189421 (25 bp)
GTGGCGCGCGCTGAACCACGGCGGG
LOC_Os02g06380
OsAffx.24129.1.S1_at--219--5751Chr02:3189370..3189394 (25 bp)
GACGGTGTTCCTGGACGAGAACCCG
LOC_Os02g06380
OsAffx.24129.1.S1_at--347--8751Chr02:3189365..3189389 (25 bp)
TGTTCCTGGACGAGAACCCGTTCTA
LOC_Os02g06380
OsAffx.24129.1.S1_at--745--1431Chr02:3189353..3189377 (25 bp)
AGAACCCGTTCTACGTGGCGCACGT
LOC_Os02g06380
OsAffx.24129.1.S1_at--1117--1791Chr02:3189350..3189374 (25 bp)
ACCCGTTCTACGTGGCGCACGTGGA
LOC_Os02g06380
OsAffx.24129.1.S1_at--500--4471Chr02:3189311..3189335 (25 bp)
GCCTGGAGGCGTACGACGTCTCGTA
LOC_Os02g06380
OsAffx.24129.1.S1_at--391--9931Chr02:3189153..3189177 (25 bp)
TACGACGTCTCCTGGGACGTCATCC
LOC_Os02g06380
OsAffx.24129.1.S1_at--749--9411Chr02:3189132..3189152 (21 bp)
TCGTCGATGGCCCAAGCGGGTTCAC
LOC_Os02g06380
OsAffx.24129.1.S1_at--407--9131NONE
TCGATGGCCCAAGCGGGTTCACGGA
NONE
OsAffx.24129.1.S1_at--239--531Chr02:3188233..3188257 (25 bp)
ATCGCGTGCGCGAGGGAGTTCCTGT
LOC_Os02g06380
OsAffx.24129.1.S1_at--366--10671Chr02:3188215..3188239 (25 bp)
TTCCTGTGCCCGGAGAACCGCGTGG
LOC_Os02g06380
Target Sequence 
GTGGCGCGCGCTGAACCACGGCGGGCGGACGGTGTTCCTGGACGAGAACCCGTTCTACGTGGCGCACGTGGAGGGCGCGC
TCCCGGGCCTGGAGGCGTACGACGTCTCGTACGCCACCGCCGTCCGCGAGTTCCCCGACCTCCTCGACGCCGCCCGCGCC
GCCCAGTCCGCCGACTGCCGCCCCGTCCAGAACCTCCTCTTCTCCGACTGCCGCCTCGCCATCAACGACCTCCCCAACCA
GCTCTACGACGTCTCCTGGGACGTCATCCTCGTCGATGGCCCAAGCGGGTTCACGGAGGGGTCGCCGGGGAGGATGTCGG
CGATCTTCTCGGCGGCGGTGATGGCGAGGACCAAGGGGTCGGAGACGGAGGTGCTGGTGCACGACTACCAGCGGGAGGTG
GAGATCGCGTGCGCGAGGGAGTTCCTGTGCCCGGAGAACCGCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis