Browse Element(s) Details


OsAffx.24154.1.S1_x_at

Description tigr:9630.m00729
TID=OsAffx.24154.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=myb-like DNA-binding domain, SHAQKYF class, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0777011/11transfactor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07730Os.50559.1.S1_at11/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07730OsAffx.2542.1.S1_at9/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07740Os.22794.1.A1_at11/112+4034219..4038403expressed protein
LOC_Os02g07750Os.7332.1.S1_at11/112+4038442..4042354LEM3 family/CDC50 family protein, expressed
LOC_Os02g07760Os.9838.1.S1_at11/112+4044612..4052271Succinate semialdehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g07770OsAffx.24154.1.S1_at11/112+4058205..4060228transfactor, putative, expressed
LOC_Os02g07770OsAffx.24154.1.S1_x_at11/112+4058205..4060228transfactor, putative, expressed
LOC_Os02g07780Os.51367.2.S1_x_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S2_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S1_x_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S3_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780OsAffx.2442.1.S1_x_at1/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07790Os.8323.1.S1_a_at11/112+4078516..4081523Protein kinase domain containing protein, expressed
LOC_Os02g07800OsAffx.11931.1.S1_at10/112+4083020..4086044expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010088biological_processphloem histogenesis
GO:0010089biological_processxylem histogenesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24154.1.S1_x_at--1038--7811Chr02:4058731..4058755 (25 bp)
GGTACAAATCCCTAGGCAACCACCA
LOC_Os02g07770
OsAffx.24154.1.S1_x_at--178--2191Chr02:4058726..4058750 (25 bp)
AAATCCCTAGGCAACCACCAGGCGG
LOC_Os02g07770
OsAffx.24154.1.S1_x_at--483--10071Chr02:4058719..4058743 (25 bp)
TAGGCAACCACCAGGCGGCGGTGCT
LOC_Os02g07770
OsAffx.24154.1.S1_x_at--115--9111Chr02:4058698..4058722 (25 bp)
TGCTCGACGTGTGCTCCATGGGCTT
LOC_Os02g07770
OsAffx.24154.1.S1_x_at--982--9011Chr02:4058665..4058689 (25 bp)
TGCAAGACCTCCACATGTACGGCGG
LOC_Os02g07770
OsAffx.24154.1.S1_x_at--616--8371Chr02:4058598..4058622 (25 bp)
GGCGTCGACGATGGAGAGCTTCTTC
LOC_Os02g07770
OsAffx.24154.1.S1_x_at--504--8551Chr02:4058587..4058611 (25 bp)
TGGAGAGCTTCTTCGCCTGCGGCGA
LOC_Os02g07770
OsAffx.24154.1.S1_x_at--1099--4691Chr02:4058437..4058461 (25 bp)
GCGGCGGCCATCATCAGCTGCAGAT
LOC_Os02g07770
OsAffx.24154.1.S1_x_at--980--4691Chr02:4058389..4058413 (25 bp)
GCGGCATCGACGTCATGGACTCCCT
LOC_Os02g07770
OsAffx.24154.1.S1_x_at--651--7151Chr02:4058354..4058378 (25 bp)
GTCTACGAGACGAAGCCGATCATGT
LOC_Os02g07770
OsAffx.24154.1.S1_x_at--269--2671Chr02:4058342..4058366 (25 bp)
AAGCCGATCATGTCCGGCGACTCGA
LOC_Os02g07770
Target Sequence 
GGTACAAATCCCTAGGCAACCACCAGGCGGCGGTGCTCGACGTGTGCTCCATGGGCTTCCCTTCCCTGCAAGACCTCCAC
ATGTACGGCGGCGCCGGCGGCGGCCACCTCGACCTGCAGCAGCAGCAGCCGCCGGCGTCGACGATGGAGAGCTTCTTCGC
CTGCGGCGACGGCGGCGGCTCGCTGGGGAAGACGGCGGCGAAGACGAGGCATTACGGCGGCGCCGGGAAGAGCCCGATGA
TGTGGGGCGTCGACGACGACGACGACGACGACGACCCGGCCGGGAAGTGCGGCGGCGGCGGCCATCATCAGCTGCAGATG
NCNCCCCCGCCGATGATGGACGGCGGCATCGACGTCATGGACTCCCTCGCCGCCGACGTCTACGAGACGAAGCCGATCAT
GTCCGGCGACTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24154.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis