Browse Element(s) Details


OsAffx.24157.1.S1_s_at

Description tigr:9630.m00749
TID=OsAffx.24157.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0793011/11B-box zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07870Os.47485.1.S1_at11/112+4120170..4127530Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os02g07880Os.9124.1.S1_at11/112+4129132..4133816expressed protein
LOC_Os02g07890Os.11533.1.S1_at11/112+4134900..4135625expressed protein
LOC_Os02g07900Os.6353.1.S1_at11/112+4135894..4140379Clathrin assembly protein, putative, expressed
LOC_Os02g07910OsAffx.2543.1.S1_at11/112+4141503..4142223fiber protein Fb15, putative, expressed
LOC_Os02g07920Os.47930.1.S1_at10/112+4144355..4147007expressed protein
LOC_Os02g07930OsAffx.24157.1.S1_s_at11/112+4149963..4151231B-box zinc finger family protein, expressed
LOC_Os02g07940NANA2+4157105..4158502retrotransposon protein, putative, unclassified
LOC_Os02g07950NANA2+4159538..4160221retrotransposon protein, putative, unclassified
LOC_Os02g07960Os.38295.1.S3_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S2_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S1_at10/112+4165204..4175209Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24157.1.S1_s_at--277--8651Chr02:4150292..4150316 (25 bp)
TGGGCCGAGTGCTCCTGATCCGCCG
LOC_Os02g07930
OsAffx.24157.1.S1_s_at--825--1851Chr02:4150250..4150274 (25 bp)
ACGACGAATCTTCCGGCCGCCTGAG
LOC_Os02g07930
OsAffx.24157.1.S1_s_at--1027--9271Chr02:4150239..4150263 (25 bp)
TCCGGCCGCCTGAGATAGAAAGTAC
LOC_Os02g07930
OsAffx.24157.1.S1_s_at--255--2451Chr02:4150212..4150236 (25 bp)
AAAATGCGAAACTTGTGGGCAATGA
LOC_Os02g07930
OsAffx.24157.1.S1_s_at--421--8651Chr02:4150197..4150221 (25 bp)
TGGGCAATGATTGTTTGTTTGCTTC
LOC_Os02g07930
OsAffx.24157.1.S1_s_at--903--8771Chr02:4150182..4150206 (25 bp)
TGTTTGCTTCCTCCCTAATTAATTA
LOC_Os02g07930
OsAffx.24157.1.S1_s_at--166--3071Chr02:4150118..4150142 (25 bp)
AATCTTGTGGTTTAGGAAGGCCTCT
LOC_Os02g07930
OsAffx.24157.1.S1_s_at--107--10091Chr02:4150106..4150130 (25 bp)
TAGGAAGGCCTCTCTTGTGGTTAAC
LOC_Os02g07930
OsAffx.24157.1.S1_s_at--468--891Chr02:4150101..4150125 (25 bp)
AGGCCTCTCTTGTGGTTAACATCAA
LOC_Os02g07930
OsAffx.24157.1.S1_s_at--1100--7991Chr02:4150055..4150079 (25 bp)
GGATGGGACTCTAATTTTTCTGTGT
LOC_Os02g07930
OsAffx.24157.1.S1_s_at--1079--5691Chr02:4150049..4150073 (25 bp)
GACTCTAATTTTTCTGTGTAGTATT
LOC_Os02g07930
Target Sequence 
TGGGCCGAGTGCTCCTGATCCGCCGCCGCCGCCGGCCACCGCACGACGAATCTTCCGGCCGCCTGAGATAGAAAGTACTA
AAAATGCGAAACTTGTGGGCAATGATTGTTTGTTTGCTTCCTCCCTAATTAATTAAATTAATCTCAAATTCTTAATCACC
ATCAAGGACCCAAAAATCTTGTGGTTTAGGAAGGCCTCTCTTGTGGTTAACATCAAATCACAAGTCTAAATCCAAATGGA
TGGGACTCTAATTTTTCTGTGTAGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24157.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis