Browse Element(s) Details


OsAffx.24213.1.S1_at

Description tigr:9630.m01149
TID=OsAffx.24213.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1264011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12570Os.37484.1.S1_at10/112+6568159..6572501Pre-mRNA cleavage complex II protein Clp1 containing protein, expressed
LOC_Os02g12580Os.10337.2.S1_at11/112+6572766..6577608Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
LOC_Os02g12580Os.10337.1.S1_x_at11/112+6572766..6577608Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
LOC_Os02g12590OsAffx.12007.1.S1_at10/112+6578959..6579539hypothetical protein
LOC_Os02g12600OsAffx.12008.1.S1_x_at11/112+6582328..6587404NOL1/NOP2/sun family protein, expressed
LOC_Os02g12600Os.18147.1.S1_at10/112+6582328..6587404NOL1/NOP2/sun family protein, expressed
LOC_Os02g12610OsAffx.24212.1.S1_at11/112+6587538..6588065Hsp20/alpha crystallin family protein
LOC_Os02g12610OsAffx.24212.1.S1_x_at11/112+6587538..6588065Hsp20/alpha crystallin family protein
LOC_Os02g12620NANA2+6588391..6590160retrotransposon protein, putative, unclassified
LOC_Os02g12630OsAffx.10901.1.S1_at3/112+6591946..6594769retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g12640OsAffx.24213.1.S1_at11/112+6595265..6595657hypothetical protein
LOC_Os02g12650Os.11236.1.S1_at11/112+6599222..6606524Peptidase family M1 containing protein, expressed
LOC_Os02g12660Os.15687.2.A1_at11/112+6609459..6613879protein kinase family protein, putative, expressed
LOC_Os02g12660OsAffx.15330.1.S1_x_at1/112+6609459..6613879protein kinase family protein, putative, expressed
LOC_Os02g12670Os.11356.1.A1_at10/112+6616308..6623367protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24213.1.S1_at--559--7991Chr02:6595551..6595575 (25 bp)
GGATGGTGACGAGACGGCCAGTGAT
LOC_Os02g12640
OsAffx.24213.1.S1_at--379--691Chr02:6595516..6595540 (25 bp)
ATGACGATGAGGAGTCTGGCAACGA
LOC_Os02g12640
OsAffx.24213.1.S1_at--781--6211Chr02:6595478..6595502 (25 bp)
GAGGCGGTTGACGACATGGGCGTAC
LOC_Os02g12640
OsAffx.24213.1.S1_at--1014--2091Chr02:6595465..6595489 (25 bp)
ACATGGGCGTACGACAAGGCGGGCG
LOC_Os02g12640
OsAffx.24213.1.S1_at--312--4691Chr02:6595443..6595467 (25 bp)
GCGGCAACGAGATGACCAGTGATGA
LOC_Os02g12640
OsAffx.24213.1.S1_at--565--6311Chr02:6595433..6595457 (25 bp)
GATGACCAGTGATGAGGACGCCAAC
LOC_Os02g12640
OsAffx.24213.1.S1_at--266--5851Chr02:6595430..6595454 (25 bp)
GACCAGTGATGAGGACGCCAACGAC
LOC_Os02g12640
OsAffx.24213.1.S1_at--887--1891Chr02:6595391..6595415 (25 bp)
ACGTAACAAGGCAGGTGGCGACGAC
LOC_Os02g12640
OsAffx.24213.1.S1_at--374--7611Chr02:6595365..6595389 (25 bp)
GGGCACACAACGAGGAGGCTAACAA
LOC_Os02g12640
OsAffx.24213.1.S1_at--754--2191Chr02:6595361..6595385 (25 bp)
ACACAACGAGGAGGCTAACAAGATG
LOC_Os02g12640
OsAffx.24213.1.S1_at--827--7611Chr02:6595295..6595319 (25 bp)
GGGAACTAGAGATAACGACAGTGGA
LOC_Os02g12640
Target Sequence 
GGATGGTGACGAGACGGCCAGTGATGAGGGGGTGGATGACGATGAGGAGTCTGGCAACGAGGGGGTGTGCAGTGAGGCGG
TTGACGACATGGGCGTACGACAAGGCGGGCGGCAACGAGATGACCAGTGATGAGGACGCCAACGACGAGGGGGCGCGGGC
ACGTAACAAGGCAGGTGGCGACGACGGGGCACACAACGAGGAGGCTAACAAGATGGGGAGGTGCAACCGACGGTTGGGGA
TGGTCGGATGGGGATTGGGAACTAGAGATAACGACAGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis