Browse Element(s) Details


OsAffx.24229.1.S1_at

Description tigr:9630.m01252
TID=OsAffx.24229.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 97201-101676
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1358011/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13530Os.10120.3.S1_at11/112+7258550..726038040S ribosomal protein S24, putative, expressed
LOC_Os02g13540NANA2+7260978..7261178hypothetical protein
LOC_Os02g13550OsAffx.24227.1.S1_at10/112+7263069..7263566hypothetical protein
LOC_Os02g13560Os.50292.1.S1_at11/112+7273050..7278242Sugar transporter type 2a, putative, expressed
LOC_Os02g13570OsAffx.12020.1.S1_at11/112+7278455..7280993Kinesin motor domain containing protein, expressed
LOC_Os02g13570Os.25515.1.S1_s_at10/112+7278455..7280993Kinesin motor domain containing protein, expressed
LOC_Os02g13580OsAffx.24229.1.S1_at11/112+7281235..7285696Kinesin motor domain containing protein, expressed
LOC_Os02g13590OsAffx.12021.1.S1_at11/112+7299770..7300027hypothetical protein
LOC_Os02g13600OsAffx.12022.1.S1_s_at11/112+7300585..7301657expressed protein
LOC_Os02g13610NANA2+7303093..7303464retrotransposon protein, putative, unclassified
LOC_Os02g13620OsAffx.24230.1.S1_x_at11/112+7310420..7310992hypothetical protein
LOC_Os02g13620OsAffx.24230.1.S1_at11/112+7310420..7310992hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24229.1.S1_at--941--9411Chr02:7281954..7281978 (25 bp)
TCGGATAAGACCTTTTCGACCTGGG
LOC_Os02g13580
OsAffx.24229.1.S1_at--1059--8011Chr02:7281930..7281954 (25 bp)
GGAGGATGACAAGTCCAGTTCAGTT
LOC_Os02g13580
OsAffx.24229.1.S1_at--594--7751Chr02:7281887..7281911 (25 bp)
GGTGAACTAGTTCTATCAAACCCTA
LOC_Os02g13580
OsAffx.24229.1.S1_at--646--10351Chr02:7281818..7281841 (24 bp)
TTTTTGGCCCTATCACTACACAAGA
LOC_Os02g13580
OsAffx.24229.1.S1_at--599--7131Chr02:7281633..7281657 (25 bp)
GTCTTCAAGGACATACAGCCACTAA
LOC_Os02g13580
OsAffx.24229.1.S1_at--878--6731Chr02:7281600..7281624 (25 bp)
GTTCTTGATGGCTACAATGTCTGCA
LOC_Os02g13580
OsAffx.24229.1.S1_at--70--8731Chr02:7281583..7281607 (25 bp)
TGTCTGCATTTTCGCATATGGGCAA
LOC_Os02g13580
OsAffx.24229.1.S1_at--438--2511Chr02:7281430..7281568 (25 bp)
AACATACACTATGATGGGACCTGAA
LOC_Os02g13580
OsAffx.24229.1.S1_at--1159--10351Chr02:7281356..7281380 (25 bp)
TTTTCAATATTTCTCATGACCGTAG
LOC_Os02g13580
OsAffx.24229.1.S1_at--138--5991Chr02:7281332..7281356 (25 bp)
GAGACACAATCACTTACGAACTTGG
LOC_Os02g13580
OsAffx.24229.1.S1_at--571--691Chr02:7281284..7281308 (25 bp)
ATGAGCAAATCCGTGATCTCCTTGG
LOC_Os02g13580
Target Sequence 
TCGGATAAGACCTTTTCGACCTGGGGAGGATGACAAGTCCAGTTCAGTTGAATATATTGGGGACAATGGTGAACTAGTTC
TATCAAACCCTACAAAACAAGGGAAGGAAGGGGGCAAAAATTTCACATTTAACAAAGTTTTTGGCCCTATCACTACACAA
GATGCTGTCTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCA
AACTGGATCAGGAAAAACATACACTATGATGGGACCTGAAAAGGCAACTGAGAAGGAATGGGGAGTCAATTATAGGGCAT
TAAATGACCTTTTCAATATTTCTCATGACCGTAGAGACACAATCACTTACGAACTTGGTGTTCAGATGATTGAGATCTAC
AATGAGCAAATCCGTGATCTCCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis