Browse Element(s) Details


OsAffx.24239.1.S1_at

Description tigr:9630.m01300
TID=OsAffx.24239.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1401010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13970Os.26931.1.S1_a_at11/112+7621905..7627260UOS1, putative, expressed
LOC_Os02g13980Os.51291.1.S1_at10/112+7627395..7628246expressed protein
LOC_Os02g13990Os.11097.1.S1_at11/112+7630870..7635230U2 small nuclear ribonucleoprotein A, putative, expressed
LOC_Os02g14000Os.10246.1.S1_at11/112+7643704..7646133P21-ARC family protein, expressed
LOC_Os02g14000OsAffx.2605.1.S1_at11/112+7643704..7646133P21-ARC family protein, expressed
LOC_Os02g14010OsAffx.24239.1.S1_at10/112+7648303..7649327hypothetical protein
LOC_Os02g14020NANA2+7650388..7655631hypothetical protein
LOC_Os02g14030OsAffx.24240.1.S1_at11/112+7658701..7659433hypothetical protein
LOC_Os02g14040OsAffx.2606.1.S1_at2/112+7671940..7672764hypothetical protein
LOC_Os02g14040OsAffx.8939.1.S1_at2/112+7671940..7672764hypothetical protein
LOC_Os02g14040OsAffx.1436.1.S1_x_at2/112+7671940..7672764hypothetical protein
LOC_Os02g14040OsAffx.8939.1.S1_x_at1/112+7671940..7672764hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24239.1.S1_at--751--2291Chr02:7649084..7649108 (25 bp)
AAAGAAGTTCAGTGGTTGTGCAAAC
LOC_Os02g14010
OsAffx.24239.1.S1_at--715--1091Chr02:7649074..7649098 (25 bp)
AGTGGTTGTGCAAACTGAAATCTTT
LOC_Os02g14010
OsAffx.24239.1.S1_at--491--9551NONE
TCTTTGACTTTGTTGCATGTACTAT
NONE
OsAffx.24239.1.S1_at--821--3511Chr02:7648409..7648433 (25 bp)
CATGTACTATATTGCTCTGTGAGAA
LOC_Os02g14010
OsAffx.24239.1.S1_at--1075--2031Chr02:7648404..7648428 (25 bp)
ACTATATTGCTCTGTGAGAATCACA
LOC_Os02g14010
OsAffx.24239.1.S1_at--223--5251Chr02:7648387..7648411 (25 bp)
GAATCACAGCATGAGTTCTCTGGCA
LOC_Os02g14010
OsAffx.24239.1.S1_at--793--4991Chr02:7648379..7648403 (25 bp)
GCATGAGTTCTCTGGCATGGAGGCT
LOC_Os02g14010
OsAffx.24239.1.S1_at--420--4751Chr02:7648357..7648381 (25 bp)
GCTGATGGCTCTAGGAGGATCTGCC
LOC_Os02g14010
OsAffx.24239.1.S1_at--15--8331Chr02:7648351..7648375 (25 bp)
GGCTCTAGGAGGATCTGCCAGCAAT
LOC_Os02g14010
OsAffx.24239.1.S1_at--294--3711Chr02:7648347..7648371 (25 bp)
CTAGGAGGATCTGCCAGCAATGCTA
LOC_Os02g14010
OsAffx.24239.1.S1_at--844--3411Chr02:7648333..7648357 (25 bp)
CAGCAATGCTATGGCTATCCCTGGC
LOC_Os02g14010
Target Sequence 
AAAGAAGTTCAGTGGTTGTGCAAACTGAAATCTTTGACTTTGTTGCATGTACTATATTGCTCTGTGAGAATCACAGCATG
AGTTCTCTGGCATGGAGGCTGATGGCTCTAGGAGGATCTGCCAGCAATGCTATGGCTATCCCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis