Browse Element(s) Details


OsAffx.24288.1.S1_at

Description tigr:9630.m01606
TID=OsAffx.24288.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1718011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17140OsAffx.32056.1.S1_x_at7/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.10637.1.S1_s_at5/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.32056.1.S1_at3/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.10637.3.S1_s_at2/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.10637.4.S1_s_at2/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.10637.2.S1_at1/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17150OsAffx.24287.1.S1_at11/112+9826265..9829110Subtilase family protein, expressed
LOC_Os02g17160Os.47463.1.S1_x_at6/112+9831579..9833015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17160Os.14491.2.S1_x_at4/112+9831579..9833015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17170OsAffx.2649.1.S1_at11/112+9836945..9838024hypothetical protein
LOC_Os02g17180OsAffx.24288.1.S1_at11/112+9838335..9839477F-box domain containing protein
LOC_Os02g17190Os.48621.1.S1_at11/112+9848226..9852381Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g17200OsAffx.12082.1.S1_at11/112+9853307..9854419hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24288.1.S1_at--1002--2271Chr02:9838888..9838912 (25 bp)
AAATGGTTCCGACATTGCCGATCTC
LOC_Os02g17180
OsAffx.24288.1.S1_at--524--3531Chr02:9838934..9838958 (25 bp)
CATGCTCTACCTCCTTGGGAAAGAT
LOC_Os02g17180
OsAffx.24288.1.S1_at--495--8351Chr02:9838963..9838987 (25 bp)
GGCTGGCATTGTATGACCCGTGCAA
LOC_Os02g17180
OsAffx.24288.1.S1_at--687--3131Chr02:9839006..9839030 (25 bp)
AATTCATGACAAACCCGAGAGCTTT
LOC_Os02g17180
OsAffx.24288.1.S1_at--562--2371Chr02:9839038..9839062 (25 bp)
AAACCGATGATAGCTACCTCGTCGA
LOC_Os02g17180
OsAffx.24288.1.S1_at--1056--9951Chr02:9839052..9839076 (25 bp)
TACCTCGTCGAGTCTGAACAAGGCG
LOC_Os02g17180
OsAffx.24288.1.S1_at--1072--6051Chr02:9839076..9839100 (25 bp)
GAGTTGATGGCAATCCTCGTTGGCC
LOC_Os02g17180
OsAffx.24288.1.S1_at--470--5811Chr02:9839108..9839132 (25 bp)
GACGCCGGTGCATATTGTGAAACTT
LOC_Os02g17180
OsAffx.24288.1.S1_at--978--8051Chr02:9839176..9839200 (25 bp)
GGAGAACGTTGTTTACCGGCACGCT
LOC_Os02g17180
OsAffx.24288.1.S1_at--460--9211Chr02:9839255..9839279 (25 bp)
TCCAAAGCTTTATGACTGGCCTGAG
LOC_Os02g17180
OsAffx.24288.1.S1_at--1098--9751Chr02:9839291..9839315 (25 bp)
TAATCTTGTTCTTCGTGATGGTGAA
LOC_Os02g17180
Target Sequence 
AAATGGTTCCGACATTGCCGATCTCCAACCCGGTCTTCCATGGCGGCATGCTCTACCTCCTTGGGAAAGATGGGAGGCTG
GCATTGTATGACCCGTGCAATCACGAAAGAGGGTTTGAAATTCATGACAAACCCGAGAGCTTTGGGTTCGAAACCGATGA
TAGCTACCTCGTCGAGTCTGAACAAGGCGAGTTGATGGCAATCCTCGTTGGCCGACGAGGGACGCCGGTGCATATTGTGA
AACTTAACGAGGAGGCGATGAAGTGGGAGGAAGTGGAGAGTTTACAGGGGAGAACGTTGTTTACCGGCACGCTCACGACG
ATGATGAGAAGTGTCAAGATCAAGTGGATGCAAAACAAGGTTTTTCTTCCAAAGCTTTATGACTGGCCTGAGACTATCCA
AGTTAATCTTGTTCTTCGTGATGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis