Browse Element(s) Details


OsAffx.24289.1.S1_at

Description tigr:9630.m01611
TID=OsAffx.24289.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1723010/11flavin-containing monooxygenase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17200OsAffx.12082.1.S1_at11/112+9853307..9854419hypothetical protein
LOC_Os02g17210OsAffx.12083.1.S1_at11/112+9867022..9868131F-box domain containing protein
LOC_Os02g17220OsAffx.12084.1.S1_at11/112+9871117..9871782transposon protein, putative, unclassified
LOC_Os02g17230OsAffx.24289.1.S1_at10/112+9877603..9879274flavin-containing monooxygenase, putative
LOC_Os02g17230OsAffx.30914.1.S1_x_at1/112+9877603..9879274flavin-containing monooxygenase, putative
LOC_Os02g17240Os.8089.1.S1_at11/112+9885607..9888391pollen-specific kinase partner protein, putative, expressed
LOC_Os02g17250Os.18074.1.A1_at11/112+9888628..9893606expressed protein
LOC_Os02g17260OsAffx.24290.1.S1_at11/112+9894795..9895713hypothetical protein
LOC_Os02g17270OsAffx.24291.1.S1_at11/112+9898845..9899207hypothetical protein
LOC_Os02g17280Os.51013.1.S1_s_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.51013.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.52125.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009851biological_processauxin biosynthesis
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24289.1.S1_at--324--6711NONE
GTTCGCAGCCCGGTACACATAATGA
NONE
OsAffx.24289.1.S1_at--60--9631Chr02:9878562..9878586 (25 bp)
TCAGTGACAATTGTGGACCCTCTTC
LOC_Os02g17230
OsAffx.24289.1.S1_at--946--5811Chr02:9878577..9878601 (25 bp)
GACCCTCTTCTTGTAATGGCAGCAA
LOC_Os02g17230
OsAffx.24289.1.S1_at--907--631Chr02:9878637..9878661 (25 bp)
ATGAGGCCTAAAATGGGCCCTCTCT
LOC_Os02g17230
OsAffx.24289.1.S1_at--665--8411Chr02:9878652..9878676 (25 bp)
GGCCCTCTCTTACTGAAGTCACAAA
LOC_Os02g17230
OsAffx.24289.1.S1_at--493--2571Chr02:9878675..9878699 (25 bp)
AACTGGCAAATCTGCTGTCATTGAT
LOC_Os02g17230
OsAffx.24289.1.S1_at--744--4731Chr02:9878688..9878712 (25 bp)
GCTGTCATTGATGTCGGCACTGCAA
LOC_Os02g17230
OsAffx.24289.1.S1_at--566--3711Chr02:9878722..9878858 (25 bp)
CTAGAGGAGTTATCGACGTGCTCGA
LOC_Os02g17230
OsAffx.24289.1.S1_at--317--191Chr02:9878892..9878916 (25 bp)
ATTTCATTGTGGGAGGCAAATTCCA
LOC_Os02g17230
OsAffx.24289.1.S1_at--162--2251Chr02:9878909..9878933 (25 bp)
AAATTCCATTTGATGCCATTGTGTT
LOC_Os02g17230
OsAffx.24289.1.S1_at--353--3611Chr02:9878925..9878949 (25 bp)
CATTGTGTTTGCCACGGGCTACAAA
LOC_Os02g17230
Target Sequence 
GTTCGCAGCCCGGTACACATAATGACAAAAGAACTAATACGTTTTGGGATGACAATGGTGCAAAATCTAGGCCTATCAGT
GACAATTGTGGACCCTCTTCTTGTAATGGCAGCAAAATTAATTTTTTGGGACTTGTCAAAGCATGGAATTATGAGGCCTA
AAATGGGCCCTCTCTTACTGAAGTCACAAACTGGCAAATCTGCTGTCATTGATGTCGGCACTGCAAAATTAATCACTAGA
GGAGTTATCGACGTGCTCGAAGGAATATTGAAGATAAATGCAAACAATGTTGAATTTCATTGTGGGAGGCAAATTCCATT
TGATGCCATTGTGTTTGCCACGGGCTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis