Browse Element(s) Details


OsAffx.24291.1.S1_at

Description tigr:9630.m01615
TID=OsAffx.24291.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1727011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17230OsAffx.24289.1.S1_at10/112+9877603..9879274flavin-containing monooxygenase, putative
LOC_Os02g17230OsAffx.30914.1.S1_x_at1/112+9877603..9879274flavin-containing monooxygenase, putative
LOC_Os02g17240Os.8089.1.S1_at11/112+9885607..9888391pollen-specific kinase partner protein, putative, expressed
LOC_Os02g17250Os.18074.1.A1_at11/112+9888628..9893606expressed protein
LOC_Os02g17260OsAffx.24290.1.S1_at11/112+9894795..9895713hypothetical protein
LOC_Os02g17270OsAffx.24291.1.S1_at11/112+9898845..9899207hypothetical protein
LOC_Os02g17280Os.51013.1.S1_s_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.51013.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.52125.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17292Os.50288.2.S1_at11/112+9912535..9919767retrotransposon protein, putative, unclassified, expressed
LOC_Os02g17292Os.50288.1.S1_at9/112+9912535..9919767retrotransposon protein, putative, unclassified, expressed
LOC_Os02g17304Os.54023.1.S1_at11/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17304OsAffx.25952.1.S1_s_at2/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17304OsAffx.13573.1.S1_at1/112+9922654..9928338NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24291.1.S1_at--632--8131Chr02:9899151..9899175 (25 bp)
GGACATAGGAGTTCTGCCGATGCCC
LOC_Os02g17270
OsAffx.24291.1.S1_at--996--971Chr02:9899145..9899169 (25 bp)
AGGAGTTCTGCCGATGCCCTCTGAT
LOC_Os02g17270
OsAffx.24291.1.S1_at--199--611Chr02:9899132..9899156 (25 bp)
ATGCCCTCTGATGTGCGGCGACAAG
LOC_Os02g17270
OsAffx.24291.1.S1_at--848--4591Chr02:9899115..9899139 (25 bp)
GCGACAAGTGCGTACACCGGCGCGA
LOC_Os02g17270
OsAffx.24291.1.S1_at--259--9871Chr02:9899103..9899127 (25 bp)
TACACCGGCGCGAGCATCAGAGAGG
LOC_Os02g17270
OsAffx.24291.1.S1_at--624--3751Chr02:9899015..9899039 (25 bp)
CTCATCTGCGGTGGATCCGGAGTTG
LOC_Os02g17270
OsAffx.24291.1.S1_at--290--3931Chr02:9898955..9898979 (25 bp)
CGGCGACTCGACGGTCATGGAGATT
LOC_Os02g17270
OsAffx.24291.1.S1_at--118--811Chr02:9898939..9898963 (25 bp)
ATGGAGATTGGAGGCACCCCCAACG
LOC_Os02g17270
OsAffx.24291.1.S1_at--170--4171Chr02:9898921..9898945 (25 bp)
CCCAACGTGCCGTGCCGATCGAAAG
LOC_Os02g17270
OsAffx.24291.1.S1_at--1132--9171Chr02:9898914..9898938 (25 bp)
TGCCGTGCCGATCGAAAGCACCAGA
LOC_Os02g17270
OsAffx.24291.1.S1_at--389--6391Chr02:9898905..9898929 (25 bp)
GATCGAAAGCACCAGATCATCCCGG
LOC_Os02g17270
Target Sequence 
GGACATAGGAGTTCTGCCGATGCCCTCTGATGTGCGGCGACAAGTGCGTACACCGGCGCGAGCATCAGAGAGGGCTGAGC
ATAGCGGGATGGAGGGTTCTGACGGGGGAGTGCTCACCGGAGATGTGCCCTTCCCCCTCATCTGCGGTGGATCCGGAGTT
GGGGCGGGCTTGGTGCGGCGCTGGGACAACGAAGGCCGGCGACTCGACGGTCATGGAGATTGGAGGCACCCCCAACGTGC
CGTGCCGATCGAAAGCACCAGATCATCCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis