Browse Element(s) Details


OsAffx.24294.1.S1_at

Description tigr:9630.m01645
TID=OsAffx.24294.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1756011/11hypothetical protein
LOC_Os02g274303/11GRF zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17500Os.11185.1.S1_a_at11/112+10074588..10081476Sugar transporter family protein, expressed
LOC_Os02g17520Os.48083.1.A1_at10/112+10084264..10087915Cytochrome C biogenesis protein, expressed
LOC_Os02g17534Os.17619.1.S1_at10/112+10088211..10094966Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g17534OsAffx.15364.2.S1_x_at1/112+10088211..10094966Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g17550NANA2+10100554..10104501transposon protein, putative, Mutator sub-class
LOC_Os02g17560OsAffx.24294.1.S1_at11/112+10105120..10105695hypothetical protein
LOC_Os02g17570OsAffx.10632.1.S1_at2/112+10108866..10109930retrotransposon protein, putative, unclassified
LOC_Os02g17580OsAffx.28496.1.S1_at11/112+10110994..10113779hypothetical protein
LOC_Os02g17590NANA2+10121710..10122009hypothetical protein
LOC_Os02g17600Os.17619.1.S1_at2/112+10128520..10130708Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os02g17600OsAffx.15364.2.S1_x_at1/112+10128520..10130708Galactoside 2-alpha-L-fucosyltransferase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24294.1.S1_at--724--7192Chr02:16154876..16154900 (25 bp)
GTCGTGAAGCGCACATCGAAGACAG
LOC_Os02g27430
OsAffx.24294.1.S1_at--265--2732Chr02:16154672..16154696 (25 bp)
AAGAAGAATGGGTTAATTGCTGGAG
LOC_Os02g27430
OsAffx.24294.1.S1_at--700--5272Chr02:16154604..16154628 (25 bp)
GAATGCAGGACAATTGGATGAAACC
LOC_Os02g27430
OsAffx.24294.1.S1_at--1055--1512Chr02:16154548..16154572 (25 bp)
AGCAGACATTGATTACTGCAGTGTC
NONE
OsAffx.24294.1.S1_at--753--2072Chr02:16154543..16154567 (25 bp)
ACATTGATTACTGCAGTGTCCATTG
NONE
OsAffx.24294.1.S1_at--1010--6552Chr02:16154538..16154562 (25 bp)
GATTACTGCAGTGTCCATTGGAAGA
NONE
OsAffx.24294.1.S1_at--678--7832Chr02:16154502..16154526 (25 bp)
GGTACTGAAGAACATGTTGGTCCTA
NONE
OsAffx.24294.1.S1_at--546--3852Chr02:16154498..16154522 (25 bp)
CTGAAGAACATGTTGGTCCTAGGTT
NONE
OsAffx.24294.1.S1_at--536--5492Chr02:16154493..16154517 (25 bp)
GAACATGTTGGTCCTAGGTTGGTTA
NONE
OsAffx.24294.1.S1_at--46--10092Chr02:16154479..16154503 (25 bp)
TAGGTTGGTTAGGTGTTGCTGTTTT
NONE
OsAffx.24294.1.S1_at--27--10812Chr02:16154475..16154499 (25 bp)
TTGGTTAGGTGTTGCTGTTTTAGTT
NONE
Target Sequence 
GTCGTGAAGCGCACATCGAAGACAGNTAGTAANCNNGATCGCATTTTCTACACTTGCCCTGACCACGAGAAAGATGGATC
TGGGTNTAACTTNTGGTTTTGGGAGGAANGATACATGAAATATTTGAAGAAGAATGGGTTAATTGCTGGAGAAGAGGCTG
CANATGTGAATGCACAAGTTGCTGCAAGNTTGAAGAATGCAGGACAATTGGATGAAACCNAAGTTNNGAGGGAAGATGAT
GATGAATTAAAGCAGACATTGATTACTGCAGTGTCCATTGGAAGAGAATTAGTAGTGGTACTGAAGAACATGTTGGTCCT
AGGTTGGTTAGGTGTTGCTGTTTTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis