Browse Element(s) Details

OsAffx.24317.5.S1_at

Description

tigr:9634.m03733
TID=OsAffx.24317.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g39090	10/11	transposon protein, putative, unclassified

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g39040	OsAffx.28001.1.S1_s_at	11/11	6	+	23180262..23183502	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g39040	OsAffx.28001.1.S1_at	11/11	6	+	23180262..23183502	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g39050	Os.54909.1.S1_at	11/11	6	+	23184075..23185284	Syntaxin 125, putative, expressed
LOC_Os06g39060	Os.4941.1.S1_at	10/11	6	+	23186197..23187970	Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os06g39070	NA	NA	6	+	23195393..23196850	UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os06g39080	NA	NA	6	+	23203563..23205056	UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g39090	OsAffx.24317.5.S1_x_at	11/11	6	+	23205641..23215431	transposon protein, putative, unclassified
LOC_Os06g39090	OsAffx.24317.5.S1_at	10/11	6	+	23205641..23215431	transposon protein, putative, unclassified
LOC_Os06g39090	OsAffx.24317.3.S1_at	2/11	6	+	23205641..23215431	transposon protein, putative, unclassified
LOC_Os06g39090	Os.55262.1.S1_x_at	2/11	6	+	23205641..23215431	transposon protein, putative, unclassified
LOC_Os06g39090	OsAffx.24317.6.S1_x_at	2/11	6	+	23205641..23215431	transposon protein, putative, unclassified
LOC_Os06g39090	OsAffx.27015.2.S1_x_at	2/11	6	+	23205641..23215431	transposon protein, putative, unclassified
LOC_Os06g39090	OsAffx.31512.1.S1_x_at	1/11	6	+	23205641..23215431	transposon protein, putative, unclassified
LOC_Os06g39090	Os.49703.1.S1_at	1/11	6	+	23205641..23215431	transposon protein, putative, unclassified
LOC_Os06g39100	OsAffx.28002.1.S1_at	11/11	6	+	23216726..23216998	hypothetical protein
LOC_Os06g39110	Os.8503.1.S1_at	11/11	6	+	23226138..23227392	expressed protein
LOC_Os06g39120	Os.37051.1.S1_at	11/11	6	+	23231538..23232572	expressed protein
LOC_Os06g39130	NA	NA	6	+	23236937..23237373	hypothetical protein
LOC_Os06g39140	Os.12297.1.S1_at	10/11	6	+	23240330..23242269	protozoan/cyanobacterial globin family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.24317.5.S1_at--969--267	1	NONE	AAGCGACGTGAGGTCGATGGCGACA	NONE
OsAffx.24317.5.S1_at--917--267	1	Chr06:23205866..23205890 (25 bp)	AAGCGACGCGGTGAAGAGGCCTCAT	LOC_Os06g39090
OsAffx.24317.5.S1_at--1159--163	1	Chr06:23205865..23205889 (25 bp)	AGCGACGCGGTGAAGAGGCCTCATC	LOC_Os06g39090
OsAffx.24317.5.S1_at--196--409	1	Chr06:23205863..23205887 (25 bp)	CGACGCGGTGAAGAGGCCTCATCGA	LOC_Os06g39090
OsAffx.24317.5.S1_at--1083--181	1	Chr06:23205861..23205885 (25 bp)	ACGCGGTGAAGAGGCCTCATCGAGA	LOC_Os06g39090
OsAffx.24317.5.S1_at--787--899	1	Chr06:23205855..23205879 (25 bp)	TGAAGAGGCCTCATCGAGAGCCGGC	LOC_Os06g39090
OsAffx.24317.5.S1_at--948--131	1	Chr06:23205852..23205876 (25 bp)	AGAGGCCTCATCGAGAGCCGGCTGA	LOC_Os06g39090
OsAffx.24317.5.S1_at--254--51	1	Chr06:23205843..23205867 (25 bp)	ATCGAGAGCCGGCTGAGGCGGGTGG	LOC_Os06g39090
OsAffx.24317.5.S1_at--36--841	1	Chr06:23205742..23205766 (25 bp)	GGCGCGGAGACGCCGCCAGAGGAGA	LOC_Os06g39090
OsAffx.24317.5.S1_at--317--109	1	Chr06:23205709..23205733 (25 bp)	AGGGCGACGAGTAATGGGCTTCGAC	LOC_Os06g39090
OsAffx.24317.5.S1_at--61--443	1	Chr06:23205706..23205730 (25 bp)	GCGACGAGTAATGGGCTTCGACGGA	LOC_Os06g39090

Target Sequence

AAGCGACGTGAGGTCGATGGCGACAGCGGTGGAGTGAAGGGGGCGGCGGTCCATGGGGAGGAGAACGTGGCGGCGGTGGC
GGGGGGAAGCGACGCGGTGAAGAGGCCTCATCGAGAGCCGGCTGAGGCGGGTGGAGGGGCGGCGACGCGACGCGACTCGC
TGGAGAAGGGGGCGGGGGAGGAGGACGGCGACGGTGGGGGCTCACAAGCCGGCGCGGAGACGCCGCCAGAGGAGAAGGCG
GCGAGGGCGACGAGTAATGGGCTTCGACGGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis