Browse Element(s) Details


OsAffx.24317.6.S1_x_at

Description tigr:9632.m02349
TID=OsAffx.24317.6
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1187011/11transposon protein, putative, unclassified
LOC_Os04g2510011/11transposon protein, putative, unclassified
LOC_Os09g2323010/11transposon protein, putative, unclassified
LOC_Os04g108607/11transposon protein, putative, unclassified
LOC_Os03g429705/11transposon protein, putative, unclassified
LOC_Os10g140404/11transposon protein, putative, unclassified
LOC_Os05g257903/11transposon protein, putative, unclassified
LOC_Os08g252603/11transposon protein, putative, unclassified
LOC_Os02g296403/11transposon protein, putative, unclassified
LOC_Os06g390902/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11830OsAffx.19407.1.S1_at11/119+6630460..6632006hypothetical protein
LOC_Os09g11840OsAffx.31512.1.S1_x_at10/119+6638203..6640170hypothetical protein
LOC_Os09g11840OsAffx.24317.5.S1_x_at1/119+6638203..6640170hypothetical protein
LOC_Os09g11840OsAffx.27015.2.S1_x_at1/119+6638203..6640170hypothetical protein
LOC_Os09g11850OsAffx.24317.3.S1_at11/119+6642023..6645354Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os09g11850OsAffx.24317.5.S1_x_at6/119+6642023..6645354Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os09g11860OsAffx.17852.1.S1_at11/119+6646197..6648197hypothetical protein
LOC_Os09g11870OsAffx.24317.6.S1_x_at11/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11870OsAffx.28002.1.A1_at10/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11870Os.3920.1.S1_at2/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11880OsAffx.19405.1.S1_at9/119+6664743..6665826hypothetical protein
LOC_Os09g11890Os.53891.1.S1_at10/119+6672037..6677975expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24317.6.S1_x_at--13--556Chr09:13791039..13791063 (25 bp)
ATCCCTTGCTCACACATTTTTGTTG
LOC_Os09g23230
OsAffx.24317.6.S1_x_at--685--3218Chr10:7403304..7403666 (25 bp)
CAAGTTCCTTGGTTTTGACACCATC
LOC_Os10g14040
OsAffx.24317.6.S1_x_at--313--556Chr10:7403326..7403533 (25 bp)
ATCCCTCGTTGTTGTGTCGTGGATA
LOC_Os10g14040
OsAffx.24317.6.S1_x_at--568--5134Chr09:13791129..13791153 (25 bp)
GCAAAGGCGGCATTTAGGTCAGACA
LOC_Os09g23230
OsAffx.24317.6.S1_x_at--1162--7814Chr09:13791145..13791169 (25 bp)
GGTCAGACAGGAATGCCGATCCTAA
LOC_Os09g23230
OsAffx.24317.6.S1_x_at--280--4238Chr10:7403397..7403420 (24 bp)
CCGATCCTAATGTGTGGTCTGAACA
LOC_Os10g14040
OsAffx.24317.6.S1_x_at--809--5493Chr09:13791180..13791204 (25 bp)
GAACACATGGTTCGGTACCGTAGCC
LOC_Os09g23230
OsAffx.24317.6.S1_x_at--771--1773Chr09:13791196..13791220 (25 bp)
ACCGTAGCCTCCGAAATCTAGGTAG
LOC_Os09g23230
OsAffx.24317.6.S1_x_at--805--6217Chr09:13791234..13791258 (25 bp)
GAGGCCGCTAGGAACCCTGAGCAGA
LOC_Os09g23230
OsAffx.24317.6.S1_x_at--1139--8895Chr09:13791314..13791338 (25 bp)
TGAGAACATCGTGGCCGGAGATTTT
LOC_Os09g23230
OsAffx.24317.6.S1_x_at--478--6056Chr10:7403568..7403591 (24 bp)
GAGATTTTGGTCCTATGCCAACTCA
LOC_Os10g14040
Target Sequence 
ATCCCTTGCTCACACATTTTTGTTGTAGTCAAGTTCCTTGGTTTTGACACCATCCCTCGTTGTTGTGTCGTGGATAGGTG
GACAATGGGAGCAAAGGCGGCATTTAGGTCAGACAGGAATGCCGATCCTAATGTGTGGTCTGAACACATGGTTCGGTACC
GTAGCCTCCGAAATCTAGGTAGTGATGCTTTCTTCGAGGCCGCTAGGAACCCTGAGCAGACAGAAAAGGCGATGGATTTC
TTAAAGGGGATTTTGGATAAAGGATCGTCATCCGATGAGAACATCGTGGCCGGAGATTTTGGTCCTATGCCAACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24317.6.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis