Browse Element(s) Details


OsAffx.24390.1.S1_at

Description tigr:9630.m02185
TID=OsAffx.24390.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Integral membrane protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2268011/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22620NANA2+13481010..13483606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22630OsAffx.24388.1.S1_at8/112+13485651..13488773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g22640NANA2+13491955..13492290retrotransposon protein, putative, unclassified
LOC_Os02g22650Os.47916.1.S1_at11/112+13495407..13498719glycosyltransferase, putative, expressed
LOC_Os02g22660NANA2+13498911..13499570retrotransposon, putative, centromere-specific
LOC_Os02g22670OsAffx.24389.1.S1_at11/112+13501708..13503432hypothetical protein
LOC_Os02g22680OsAffx.24390.1.S1_at11/112+13505260..13507432Integral membrane protein DUF6 containing protein, expressed
LOC_Os02g22680Os.54088.1.S1_at1/112+13505260..13507432Integral membrane protein DUF6 containing protein, expressed
LOC_Os02g22690OsAffx.2717.1.S1_at9/112+13519332..13521711hypothetical protein
LOC_Os02g22690OsAffx.2717.1.S1_x_at9/112+13519332..13521711hypothetical protein
LOC_Os02g22690Os.54523.1.S1_at1/112+13519332..13521711hypothetical protein
LOC_Os02g22690OsAffx.25887.1.S1_at1/112+13519332..13521711hypothetical protein
LOC_Os02g22700OsAffx.8215.1.S1_at1/112+13522721..13527763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22700Os.47004.1.S1_at1/112+13522721..13527763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22710OsAffx.12161.1.S1_at11/112+13530080..13532078hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24390.1.S1_at--377--7691Chr02:13506840..13506864 (25 bp)
GGGTTTCTATCTTCTTGGTTTGCAC
LOC_Os02g22680
OsAffx.24390.1.S1_at--741--8331Chr02:13506462..13506777 (25 bp)
GGCTGCTTCTCTGAGGCTTGAGCAA
LOC_Os02g22680
OsAffx.24390.1.S1_at--350--5111Chr02:13506072..13506421 (25 bp)
GCACAGTTACCCCAGTCTTGAAGAA
LOC_Os02g22680
OsAffx.24390.1.S1_at--927--311Chr02:13506047..13506071 (25 bp)
ATACCCAGCCAGGTTGTCAATGCTT
LOC_Os02g22680
OsAffx.24390.1.S1_at--645--8491Chr02:13506012..13506036 (25 bp)
TGGCATTCGGGCTGGTACAATTCTT
LOC_Os02g22680
OsAffx.24390.1.S1_at--584--3151Chr02:13505994..13506018 (25 bp)
AATTCTTGGCCATAGCAGCATTCTG
LOC_Os02g22680
OsAffx.24390.1.S1_at--1111--3031Chr02:13505686..13505942 (25 bp)
AATCCTCTACGCTATCTGGTGCATT
LOC_Os02g22680
OsAffx.24390.1.S1_at--940--9071Chr02:13505638..13505662 (25 bp)
TGCTATCTTCCAACCTGTACAAACT
LOC_Os02g22680
OsAffx.24390.1.S1_at--940--7131Chr02:13505589..13505613 (25 bp)
GTCATTCTTGGCGATCTACTATACA
LOC_Os02g22680
OsAffx.24390.1.S1_at--738--4731Chr02:13505382..13505406 (25 bp)
GCTGTCCTTATAGTGATTGGCCTCT
LOC_Os02g22680
OsAffx.24390.1.S1_at--843--211Chr02:13505303..13505327 (25 bp)
ATTTGTCAAGGCATCTCCTCAGTGA
LOC_Os02g22680
Target Sequence 
GGGTTTCTATCTTCTTGGTTTGCACTACCTGTCTCCAACCTATGCTTCTGCTATCCAAAATACAGTACCAGCAATAACCT
TTGCCTTGGCTGCTTCTCTGAGGCTTGAGCAAGTAAACATAAACAAGAGGTATGGGATGGCAAAAGTGATTGGCACAGTT
ACCCCAGTCTTGAAGAAATACCCAGCCAGGTTGTCAATGCTTGCGCTGACCCTGGCATTCGGGCTGGTACAATTCTTGGC
CATAGCAGCATTCTGGGAGAATGACATTGGGAAGTGGAGGCTTCATTCTGGAGAAGAGCTCTTCACAATCCTCTACGCTA
TCTGGTGCATTGACAGGGGTGGTGCTCTGTTCACTGCTATCTTCCAACCTGTACAAACTGTCATGGTGGCTATAATGGCT
GCCGTCATTCTTGGCGATCTACTATACACAGGAGGGATCATTGGAGCTGTCCTTATAGTGATTGGCCTCTACCTTGTGTT
GTGGGGTAAAAACGAGGAGAAGAAAAGCAACAGTAACCAACCAGATTTGTCAAGGCATCTCCTCAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis