Browse Element(s) Details


OsAffx.24407.2.S1_s_at

Description tigr:9630.m02293
TID=OsAffx.24407.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NADH dehydrogenase ND2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2459011/11NADH dehydrogenase 2-like ORF 180, putative
LOC_Os01g5806011/11hypothetical protein
LOC_Os02g2458011/11NAD, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24550Os.46874.2.S1_at5/112+14218708..14223921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24560OsAffx.24406.1.S1_at11/112+14225581..14228700hypothetical protein
LOC_Os02g24570OsAffx.278.1.S1_at2/112+14230232..14233344retrotransposon protein, putative, unclassified
LOC_Os02g24580OsAffx.24407.2.S1_s_at11/112+14235337..14235816NAD, putative
LOC_Os02g24590OsAffx.24407.2.S1_s_at11/112+14242909..14244224NADH dehydrogenase 2-like ORF 180, putative
LOC_Os02g24600Os.29056.1.S1_s_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600Os.29056.1.S2_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32261.1.A1_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32263.1.A1_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32260.1.S1_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32262.1.A1_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600Os.26535.1.S1_x_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32259.1.S1_x_at10/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.26050.13.S1_x_at4/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24610Os.26535.1.S1_x_at11/112+14261109..14263033DNA-directed RNA polymerase beta chain, putative
LOC_Os02g24620OsAffx.32194.1.S1_x_at10/112+14268249..14270687DNA-directed RNA polymerase beta chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0045333biological_processcellular respiration
GO:0005739cellular_componentmitochondrion
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24407.2.S1_s_at--168--52718Chr10:10469240..10469264 (25 bp)
GAATGTTTCAGTTTATGTTCCTACC
NONE
OsAffx.24407.2.S1_s_at--145--68318Chr10:10469250..10469274 (25 bp)
GTTTATGTTCCTACCTATTGTCTGG
NONE
OsAffx.24407.2.S1_s_at--663--42917Chr10:10469259..10469283 (25 bp)
CCTACCTATTGTCTGGATATACCAA
NONE
OsAffx.24407.2.S1_s_at--793--2916Chr10:10469277..10469301 (25 bp)
ATACCAAGAGAGATCTACGGTCTAA
NONE
OsAffx.24407.2.S1_s_at--856--64116Chr10:10469288..10469312 (25 bp)
GATCTACGGTCTAATGAGGCTACTA
NONE
OsAffx.24407.2.S1_s_at--442--1118Chr10:10469348..10469372 (25 bp)
ATTCTGGTTCATGGTTTCTCTTGGC
NONE
OsAffx.24407.2.S1_s_at--53--105917Chr10:10469363..10469387 (25 bp)
TTCTCTTGGCTATATGGTTCATCTG
NONE
OsAffx.24407.2.S1_s_at--196--76517Chr10:10469391..10469415 (25 bp)
GGGAGATCGAGCTTCAAGAAATTGT
NONE
OsAffx.24407.2.S1_s_at--388--73518Chr11:27261093..27261117 (25 bp)
GTGAACGGTCTTATCAATACACAAA
NONE
OsAffx.24407.2.S1_s_at--297--98517Chr11:27261110..27261134 (25 bp)
TACACAAATGTATAACTCCCCAGGA
NONE
OsAffx.24407.2.S1_s_at--768--25316Chr11:27261123..27261147 (25 bp)
AACTCCCCAGGAATTTCAATTGCGC
NONE
Target Sequence 
GAATGTTTCAGTTTATGTTCCTACCTATTGTCTGGATATACCAAGAGAGATCTACGGTCTAATGAGGCTACTATGAAATA
TTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCTGGGGGGGAGATCG
AGCTTCAAGAAATTGTGAACGGTCTTATCAATACACAAATGTATAACTCCCCAGGAATTTCAATTGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24407.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis