Browse Element(s) Details


OsAffx.24436.1.S1_at

Description tigr:9640.m00277
TID=OsAffx.24436.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to tyrosine-specific protein phosphatase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0363010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03570NANA12+1426776..1431538retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03580OsAffx.26199.2.S1_at11/1112+1432889..1435183hypothetical protein
LOC_Os12g03580Os.27362.1.S2_at1/1112+1432889..1435183hypothetical protein
LOC_Os12g03594Os.52665.1.S1_at11/1112+1436032..1444090F-box domain containing protein, expressed
LOC_Os12g03610OsAffx.7475.1.S1_at11/1112+1448383..1449226hypothetical protein
LOC_Os12g03619NANA12+1449724..1450048NA
LOC_Os12g03630Os.57387.1.S1_at11/1112+1451167..1455276expressed protein
LOC_Os12g03630OsAffx.24436.1.S1_at10/1112+1451167..1455276expressed protein
LOC_Os12g03640Os.17338.1.S1_at9/1112+1456297..1458940Protein kinase domain containing protein, expressed
LOC_Os12g03650NANA12+1461306..1463813D-mannose binding lectin family protein
LOC_Os12g03660OsAffx.31566.2.S1_at9/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.31566.2.S1_x_at9/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.31566.1.S1_at4/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03660OsAffx.18656.1.S1_at2/1112+1467138..1470694transposon protein, putative, unclassified
LOC_Os12g03670Os.50555.1.S1_at7/1112+1472687..1475197D-mannose binding lectin family protein
LOC_Os12g03670Os.50555.1.S2_at5/1112+1472687..1475197D-mannose binding lectin family protein
LOC_Os12g03680OsAffx.31567.1.S1_at7/1112+1476356..1486011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03680OsAffx.28520.1.S1_at1/1112+1476356..1486011retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24436.1.S1_at--924--2611NONE
AACCCTGTCTACAATATTACATGCA
NONE
OsAffx.24436.1.S1_at--459--10151Chr12:1454687..1454711 (25 bp)
TATCTCTGTAGCTACCCTGAGGTGG
LOC_Os12g03630
OsAffx.24436.1.S1_at--963--3711Chr12:1454698..1454722 (25 bp)
CTACCCTGAGGTGGCTGACAAGTGG
LOC_Os12g03630
OsAffx.24436.1.S1_at--715--8951Chr12:1454713..1454737 (25 bp)
TGACAAGTGGGCCTGCCAACGGTCT
LOC_Os12g03630
OsAffx.24436.1.S1_at--1126--9191Chr12:1454726..1454750 (25 bp)
TGCCAACGGTCTGGGAGTCCATTCG
LOC_Os12g03630
OsAffx.24436.1.S1_at--1016--9231Chr12:1454743..1454767 (25 bp)
TCCATTCGCCGGACAGGGAGACAAC
LOC_Os12g03630
OsAffx.24436.1.S1_at--1041--5651Chr12:1454754..1454778 (25 bp)
GACAGGGAGACAACGGCGCCCATTA
LOC_Os12g03630
OsAffx.24436.1.S1_at--5--4331Chr12:1454990..1455014 (25 bp)
CCTTGAGCTGGCTCATGGGCCTCTG
LOC_Os12g03630
OsAffx.24436.1.S1_at--534--6371Chr12:1455066..1455090 (25 bp)
GATCCTCCGGGCCTTCCGGTTAGCT
LOC_Os12g03630
OsAffx.24436.1.S1_at--980--4471Chr12:1455128..1455152 (25 bp)
GCCGGCTTCCTAGGCCATCGGAATG
LOC_Os12g03630
OsAffx.24436.1.S1_at--751--491Chr12:1455144..1455168 (25 bp)
ATCGGAATGGGTCCTCCCTACGGAG
LOC_Os12g03630
Target Sequence 
AACCCTGTCTACAATATTACATGCAAAGGAAATTACAACCCTACCCCTATCTCTGTAGCTACCCTGAGGTGGCTGACAAG
TGGGCCTGCCAACGGTCTGGGAGTCCATTCGCCGGACAGGGAGACAACGGCGCCCATTAAGGGGGGCGGCTCTGGCCTCG
GAGCCATGTCAAGAGCTCTGGAGCCCTTGAGCTGGCTCATGGGCCTCTGGGGCCCCCGAACCGGCGCCGGGGCCTCCGGT
GGCCCATGGCTGGGCTCCGGGATCCTCCGGGCCTTCCGGTTAGCTTCAAACTTCCCGGAGCCAACTGCCCTCTTCGGGCT
CGGCCGGCTTCCTAGGCCATCGGAATGGGTCCTCCCTACGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis