Browse Element(s) Details


OsAffx.24454.2.S1_x_at

Description tigr:9630.m02604
TID=OsAffx.24454.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DNA topoisomerase I, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2744011/11Topoisomerase DNA binding C4 zinc finger family protein, expressed
LOC_Os06g169802/11DNA topoisomerase I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27389Os.6.2.S1_at4/112+16141077..16141953NA
LOC_Os02g27389Os.50295.1.S1_at1/112+16141077..16141953NA
LOC_Os02g27400Os.16914.1.S1_at11/112+16144177..16147057F-box protein interaction domain containing protein, expressed
LOC_Os02g27400Os.16914.1.S2_at11/112+16144177..16147057F-box protein interaction domain containing protein, expressed
LOC_Os02g27420NANA2+16150406..16154260transposon protein, putative, Mutator sub-class
LOC_Os02g27430OsAffx.24294.1.S1_at3/112+16154595..16155020GRF zinc finger family protein
LOC_Os02g27440Os.46744.1.S1_at11/112+16166830..16174467Topoisomerase DNA binding C4 zinc finger family protein, expressed
LOC_Os02g27440OsAffx.24454.2.S1_x_at11/112+16166830..16174467Topoisomerase DNA binding C4 zinc finger family protein, expressed
LOC_Os02g27440OsAffx.24454.1.S1_at11/112+16166830..16174467Topoisomerase DNA binding C4 zinc finger family protein, expressed
LOC_Os02g27440Os.7779.1.S2_x_at10/112+16166830..16174467Topoisomerase DNA binding C4 zinc finger family protein, expressed
LOC_Os02g27450OsAffx.32146.1.S1_at11/112+16177731..16178943hypothetical protein
LOC_Os02g27460NANA2+16189556..16191285transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006265biological_processDNA topological change
GO:0006268biological_processDNA unwinding during replication
GO:0003677molecular_functionDNA binding
GO:0003917molecular_functionDNA topoisomerase type I activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24454.2.S1_x_at--940--2771Chr02:16173230..16173250 (21 bp)
AAGAGCTCCTCTTTCTGAAGTGAAA
LOC_Os02g27440
OsAffx.24454.2.S1_x_at--386--3052Chr02:16173395..16173419 (25 bp)
AATCGAGCTATTGCAGTATCCCAAA
LOC_Os02g27440
OsAffx.24454.2.S1_x_at--1041--2472Chr02:16173515..16173539 (25 bp)
AACACCCTGATGATGATCTTCCTGT
LOC_Os02g27440
OsAffx.24454.2.S1_x_at--445--9071Chr02:16173591..16173615 (25 bp)
TGCTCCATTGCCGAAGGTACGTGTT
LOC_Os02g27440
OsAffx.24454.2.S1_x_at--1018--6611Chr02:16173640..16173664 (25 bp)
GTTGGTACCACACACACCATTATGA
LOC_Os02g27440
OsAffx.24454.2.S1_x_at--87--751Chr02:16173688..16173712 (25 bp)
ATGTTTAGTTCTTTTGTGCTGGCGC
LOC_Os02g27440
OsAffx.24454.2.S1_x_at--475--8391Chr02:16173708..16173732 (25 bp)
GGCGCTATTGTTTTCTGCTATACTA
LOC_Os02g27440
OsAffx.24454.2.S1_x_at--569--10791Chr02:16173781..16173805 (25 bp)
TTGTTTGTGACAGAGCGCAGACCCA
LOC_Os02g27440
OsAffx.24454.2.S1_x_at--148--9951Chr02:16173814..16173838 (25 bp)
TACGCTCGAGCGTGCATTGAAGCTT
LOC_Os02g27440
OsAffx.24454.2.S1_x_at--1040--3971Chr02:16173853..16173877 (25 bp)
CGTGATAAGGTTTGGTCGCCCTAAG
LOC_Os02g27440
OsAffx.24454.2.S1_x_at--211--3411Chr02:16173891..16173915 (25 bp)
CAGAACCCCTTGAATACCATTCGTA
LOC_Os02g27440
Target Sequence 
AAGAGCTCCTCTTTCTGAAGTGAAAGATATTGACTCAATCACTTTAGAAGATGCAATCGAGCTATTGCAGTATCCCAAAA
TCCTGGGAAAACACCCTGATGATGATCTTCCTGTACTTGTAACACATTCTAAATCTGGATTTAGAATCAGACACAGGAGA
ACTCTTGCTCCATTGCCGAAGGTACGTGTTCTAATATTGTACTATCTGTTGAATGTTGGTACCACACACACCATTATGAT
ACTACGCGAATACAAACGCGCAATGTTTAGTTCTTTTGTGCTGGCGCTATTGTTTTCTGCTATACTACAATTGAACAAAA
CTTTTAACTGCTGAGATGCATATATTTCTTCAAAATTGTTTGTGACAGAGCGCAGACCCAAAGGAGATTACGCTCGAGCG
TGCATTGAAGCTTTTGACAGGTAAAAACGTGATAAGGTTTGGTCGCCCTAAGGGAATCAAGAACCCAGAACCCCTTGAAT
ACCATTCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24454.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis