Browse Element(s) Details


OsAffx.24473.1.S1_at

Description tigr:9630.m02685
TID=OsAffx.24473.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2821011/11hypothetical protein
LOC_Os05g327706/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28170Os.9456.1.S1_at11/112+16672418..16674160Transferase family protein, expressed
LOC_Os02g28180OsAffx.13052.2.S1_at11/112+16674535..16677212transposon protein, putative, unclassified
LOC_Os02g28190NANA2+16684504..16684719hypothetical protein
LOC_Os02g28200OsAffx.12252.3.S1_x_at11/112+16686137..16687654Transferase family protein
LOC_Os02g28210OsAffx.24473.1.S1_at11/112+16693441..16693728hypothetical protein
LOC_Os02g28220Os.8902.1.S1_at11/112+16696291..16698079Transferase family protein, expressed
LOC_Os02g28230NANA2+16701068..16701373hypothetical protein
LOC_Os02g28240OsAffx.12252.1.S1_at11/112+16701967..16703216Transferase family protein
LOC_Os02g28240OsAffx.12252.3.S1_x_at2/112+16701967..16703216Transferase family protein
LOC_Os02g28250Os.26886.6.S1_s_at9/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28250Os.26886.2.S1_s_at8/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28250OsAffx.3425.1.S1_at1/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28250OsAffx.5348.1.S1_at1/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28260Os.26886.3.S1_x_at4/112+16708471..16709810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28270NANA2+16712881..16713213hypothetical protein
LOC_Os02g28280OsAffx.12250.2.S1_at11/112+16715345..16717026hypothetical protein
LOC_Os02g28280OsAffx.12250.1.S1_at5/112+16715345..16717026hypothetical protein
LOC_Os02g28290OsAffx.2774.1.S1_at11/112+16717763..16718276hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24473.1.S1_at--3--891Chr02:16693512..16693536 (25 bp)
ATGGCCAGATCCGTGTCCCAGAGGC
LOC_Os02g28210
OsAffx.24473.1.S1_at--655--1294Chr02:16693518..16693542 (25 bp)
AGATCCGTGTCCCAGAGGCCAGATC
LOC_Os02g28210
OsAffx.24473.1.S1_at--1140--875Chr02:16693533..16693557 (25 bp)
AGGCCAGATCCGTGTCCCGGAGGCA
LOC_Os02g28210
OsAffx.24473.1.S1_at--813--8693Chr02:16693545..16693569 (25 bp)
TGTCCCGGAGGCAGACTCGGCGGTT
LOC_Os02g28210
OsAffx.24473.1.S1_at--373--1973Chr02:16693559..16693583 (25 bp)
ACTCGGCGGTTGTCGTCGGTGGTCA
LOC_Os02g28210
OsAffx.24473.1.S1_at--313--3975Chr02:16693565..16693589 (25 bp)
CGGTTGTCGTCGGTGGTCATCGTCG
LOC_Os02g28210
OsAffx.24473.1.S1_at--4--7211Chr02:16693589..16693613 (25 bp)
GTCGTCGCTCGAGCTTAGCGTCGGT
LOC_Os02g28210
OsAffx.24473.1.S1_at--551--7231Chr02:16693592..16693616 (25 bp)
GTCGCTCGAGCTTAGCGTCGGTGAC
LOC_Os02g28210
OsAffx.24473.1.S1_at--429--9371Chr02:16693597..16693621 (25 bp)
TCGAGCTTAGCGTCGGTGACCCCGA
LOC_Os02g28210
OsAffx.24473.1.S1_at--462--1251Chr02:16693600..16693624 (25 bp)
AGCTTAGCGTCGGTGACCCCGAGCT
LOC_Os02g28210
OsAffx.24473.1.S1_at--233--9433Chr02:16693609..16693633 (25 bp)
TCGGTGACCCCGAGCTCCTGGAGGC
LOC_Os02g28210
Target Sequence 
ATGGCCAGATCCGTGTCCCAGAGGCCAGATCCGTGTCCCGGAGGCAGACTCGGCGGTTGTCGTCGGTGGTCATCGTCGTC
GTCGCTCGAGCTTAGCGTCGGTGACCCCGAGCTCCTGGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis