Browse Element(s) Details


OsAffx.24479.1.S1_at

Description tigr:9630.m02720
TID=OsAffx.24479.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g285609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28520NANA2+16869277..16873512retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g28530OsAffx.24478.1.S1_at9/112+16875571..16877824hypothetical protein
LOC_Os02g28540NANA2+16880641..16882725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28550NANA2+16883301..16887117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28560OsAffx.24479.1.S1_at9/112+16897994..16899026hypothetical protein
LOC_Os02g28570OsAffx.2778.1.S1_at11/112+16901844..16906742hypothetical protein
LOC_Os02g28570OsAffx.15255.1.S1_x_at1/112+16901844..16906742hypothetical protein
LOC_Os02g28580Os.18336.1.S1_at11/112+16909659..16913424expressed protein
LOC_Os02g28590OsAffx.24480.1.S1_x_at11/112+16916519..16917191hypothetical protein
LOC_Os02g28590Os.28385.3.S1_x_at1/112+16916519..16917191hypothetical protein
LOC_Os02g28590OsAffx.25784.1.S1_x_at1/112+16916519..16917191hypothetical protein
LOC_Os02g28590OsAffx.19451.3.S1_x_at1/112+16916519..16917191hypothetical protein
LOC_Os02g28600OsAffx.17122.2.S1_at11/112+16918153..16919505F-box domain containing protein
LOC_Os02g28600OsAffx.17122.2.S1_s_at11/112+16918153..16919505F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24479.1.S1_at--1121--6131Chr02:16898966..16898990 (25 bp)
GAGGGTGACACTACTTATGATTGGA
LOC_Os02g28560
OsAffx.24479.1.S1_at--220--6971Chr02:16898932..16898956 (25 bp)
GTAGCCAACCCGAAGATCCAAAGTC
LOC_Os02g28560
OsAffx.24479.1.S1_at--1094--6151Chr02:16898840..16898864 (25 bp)
GAGGATGTCTTATTGGTCTCAGCAT
LOC_Os02g28560
OsAffx.24479.1.S1_at--556--10411NONE
TTATTGGTCTCAGCATGGCTGCACC
NONE
OsAffx.24479.1.S1_at--795--851NONE
ATGGCTGCACCTTTTGGTCCTCAGA
NONE
OsAffx.24479.1.S1_at--468--9651Chr02:16898301..16898325 (25 bp)
TCAGAGCTGCGTTCCTCAAGATAGA
LOC_Os02g28560
OsAffx.24479.1.S1_at--1054--5951Chr02:16898278..16898302 (25 bp)
GAGAATCTTATTCCAGCTAATGGTA
LOC_Os02g28560
OsAffx.24479.1.S1_at--272--4831Chr02:16898263..16898287 (25 bp)
GCTAATGGTATGCAGCTATCGGGAA
LOC_Os02g28560
OsAffx.24479.1.S1_at--752--3391Chr02:16898251..16898275 (25 bp)
CAGCTATCGGGAAAACCTACAGGAA
LOC_Os02g28560
OsAffx.24479.1.S1_at--1001--651Chr02:16898105..16898129 (25 bp)
ATGCAAAGTTGCATCCGCACTTGAT
LOC_Os02g28560
OsAffx.24479.1.S1_at--437--5111Chr02:16898089..16898113 (25 bp)
GCACTTGATCAACAGCAGATTGATT
LOC_Os02g28560
Target Sequence 
GAGGGTGACACTACTTATGATTGGAGTGCTCTAGGTAGCCAACCCGAAGATCCAAAGTCACAAGTTGGGGAAGGGGAAGC
ATATGTGAGATCAAACCAAAAAAGATCTAAGAATTTTAGTATGAAGGAGGATGTCTTATTGGTCTCAGCATGGCTGCACC
TTTTGGTCCTCAGAGCTGCGTTCCTCAAGATAGAGAATCTTATTCCAGCTAATGGTATGCAGCTATCGGGAAAACCTACA
GGAAGGAAGAAAGAGAAAGAAAAACAGCGTCAACACTCAGACCAATCACAAATTGATGCTTTAGATCATTTATGGGTTAA
GAAGAAAGAGGCTGATGTGGAGAAGGAGTGGCAAAGAGCGGAGAGATGCAAAGTTGCATCCGCACTTGATCAACAGCAGA
TTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis