Browse Element(s) Details


OsAffx.24492.1.S1_at

Description tigr:9630.m02788
TID=OsAffx.24492.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2921011/11ankyrin repeat protein FPV115, putative, expressed
LOC_Os02g291501/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29190OsAffx.2786.1.S1_at11/112+17303250..17310286TPR Domain containing protein, expressed
LOC_Os02g29200NANA2+17312001..17312441hypothetical protein
LOC_Os02g29210OsAffx.24492.1.S1_at11/112+17321724..17329722ankyrin repeat protein FPV115, putative, expressed
LOC_Os02g29220OsAffx.30136.2.S1_at11/112+17331725..17336458Transcription termination factor nusG family protein, expressed
LOC_Os02g29220Os.48068.1.S1_x_at3/112+17331725..17336458Transcription termination factor nusG family protein, expressed
LOC_Os02g29230OsAffx.2788.1.S1_at11/112+17348970..17357069hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24492.1.S1_at--182--10712Chr02:17323048..17323072 (25 bp)
TTGCGAAACACTTTACGATGGATTG
LOC_Os02g29210
OsAffx.24492.1.S1_at--880--4451Chr02:17322113..17322137 (25 bp)
GCCTCACTTTTTGTCCAAGAGCCTT
LOC_Os02g29210
OsAffx.24492.1.S1_at--17--8711Chr02:17322102..17322126 (25 bp)
TGTCCAAGAGCCTTTGGTTCCCTGA
LOC_Os02g29210
OsAffx.24492.1.S1_at--54--5431Chr02:17322033..17322057 (25 bp)
GAACCATAATGGGTGTCCTTTTTGT
LOC_Os02g29210
OsAffx.24492.1.S1_at--379--7711Chr02:17322022..17322046 (25 bp)
GGTGTCCTTTTTGTAAGTGAAGCAA
LOC_Os02g29210
OsAffx.24492.1.S1_at--128--1971Chr02:17321977..17322001 (25 bp)
ACTGTTGAACATCACGGTGTTTCGC
LOC_Os02g29210
OsAffx.24492.1.S1_at--1039--10731Chr02:17321973..17321997 (25 bp)
TTGAACATCACGGTGTTTCGCGTCT
LOC_Os02g29210
OsAffx.24492.1.S1_at--1122--1911Chr02:17321964..17321988 (25 bp)
ACGGTGTTTCGCGTCTATAACTGCC
LOC_Os02g29210
OsAffx.24492.1.S1_at--391--10291Chr02:17321958..17321982 (25 bp)
TTTCGCGTCTATAACTGCCGTTTGG
LOC_Os02g29210
OsAffx.24492.1.S1_at--939--7732Chr02:14618823..14618871 (24 bp)
GGTGGTGTGGGTGCAATGCTGCATT
NONE
OsAffx.24492.1.S1_at--273--7651Chr02:17321908..17321932 (25 bp)
GGGATGGCATAAGGCCAGTCCCAAC
LOC_Os02g29210
Target Sequence 
TTGCGAAACACTTTACGATGGATTGAAGTTGGATCCAGGGAACTCTGAGATGGAGGATGCATTACGGGAAGCTCTGGCGT
CCTTGAAGGCATCTGCAAGCACAGAGGCTAGGTGAACAGCATGGGTGTTCGCAAGGTGGGCAAGGCGCTCTGGTCCTCTC
CTACACGTTTTGTCCAAGGCGCCTCACTTTTTGTCCAAGAGCCTTTGGTTCCCTGAGTCCACAGGTGTTCTCACATTTTG
CCCAGAGACTTCGATACCCAGAACCATAATGGGTGTCCTTTTTGTAAGTGAAGCAAAGTAGCTAACCGGGGTGGTGACTG
TTGAACATCACGGTGTTTCGCGTCTATAACTGCCGTTTGGGGTGGTGTGGGTGCAATGCTGCATTGGGATGGCATAAGGC
CAGTCCCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis