Browse Element(s) Details


OsAffx.24508.2.S1_at

Description tigr:9630.m02877
TID=OsAffx.24508.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3009010/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30040OsAffx.1646.1.S1_x_at1/112+17836562..17839492retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30050Os.37768.1.S1_at10/112+17840425..1784202060S ribosomal protein L35, putative, expressed
LOC_Os02g30060OsAffx.24506.1.S1_at11/112+17842472..178466783-oxoacyl-reductase, chloroplast precursor, putative, expressed
LOC_Os02g30070OsAffx.24507.1.S1_at11/112+17853780..17854251expressed protein
LOC_Os02g30080OsAffx.24508.1.S1_at11/112+17856325..17861119Cytochrome P450 family protein, expressed
LOC_Os02g30090OsAffx.24508.2.S1_at10/112+17862035..17865321Cytochrome P450 family protein
LOC_Os02g30100Os.13604.1.S1_at11/112+17867793..17870042Cytochrome P450 family protein, expressed
LOC_Os02g30100Os.23296.1.S1_x_at1/112+17867793..17870042Cytochrome P450 family protein, expressed
LOC_Os02g30110Os.23296.1.S1_x_at10/112+17875019..17880557Cytochrome P450 family protein, expressed
LOC_Os02g30120Os.28943.1.S1_x_at1/112+17887328..17890541retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24508.2.S1_at--12--1591Chr02:17863070..17863092 (23 bp)
AGCTCATCCGCTCATTGTGCATCAG
LOC_Os02g30090
OsAffx.24508.2.S1_at--38--31NONE
ATTGTGCATCAGTTCCCTTGAAGCC
NONE
OsAffx.24508.2.S1_at--611--9491Chr02:17864687..17864711 (25 bp)
TCTCTCCTACTAAACAACCCGAATG
LOC_Os02g30090
OsAffx.24508.2.S1_at--385--151Chr02:17864809..17864833 (25 bp)
ATTATCATGGAGACACTCCGCTTAT
LOC_Os02g30090
OsAffx.24508.2.S1_at--948--10551Chr02:17864849..17864873 (25 bp)
TTCTTGTGCCTCATGAAGCGTCTAC
LOC_Os02g30090
OsAffx.24508.2.S1_at--1038--2671Chr02:17864864..17864888 (25 bp)
AAGCGTCTACTGATTGTTCAATTGC
LOC_Os02g30090
OsAffx.24508.2.S1_at--832--10631Chr02:17864885..17864909 (25 bp)
TTGCTGGTTTTCATATTACCCGTGG
LOC_Os02g30090
OsAffx.24508.2.S1_at--576--10211Chr02:17864898..17864922 (25 bp)
TATTACCCGTGGGACAATGCTTCTT
LOC_Os02g30090
OsAffx.24508.2.S1_at--1140--3571Chr02:17864930..17864954 (25 bp)
CATTTGCCATTCACAGAGATCCTCA
LOC_Os02g30090
OsAffx.24508.2.S1_at--645--1771Chr02:17865232..17865256 (25 bp)
ACCGAGGGATCTGGTCTTACCATGC
LOC_Os02g30090
OsAffx.24508.2.S1_at--302--991Chr02:17865260..17865284 (25 bp)
AGGAGGTGCCTCTGCAAGCCTTCTA
LOC_Os02g30090
Target Sequence 
AGCTCATCCGCTCATTGTGCATCAGTTCCCTTGAAGCCGGAACAGATACTTCAGCTGATACAATTGAGTGGGCAATGTCT
CTCCTACTAAACAACCCGAATGTGATGAGAAAAGCTCGTGACGAAATTGATGCATTCATAGGACAACCATGCATTATCAT
GGAGACACTCCGCTTATACCCGCCAGCGCCACTTCTTGTGCCTCATGAAGCGTCTACTGATTGTTCAATTGCTGGTTTTC
ATATTACCCGTGGGACAATGCTTCTTGTAAACACATTTGCCATTCACAGAGATCCTCAAGTATGGAATGAACCAACAAGC
TTCATCCCTGAAAGATTTGAGAATGGAAGAAGTGAAGGGAAGATGGCAATCCCATTTGGCATGGGGAGGTGCAAATGCCC
TGCAGAGAACTTGGGCATGCAAATGGTAGGTCTTGCCCTTGGGACAATGATTCAGTGCTTTGAGTGGGAAAGAGTTGGAG
AGGAGCTAGTAGACATGACCGAGGGATCTGGTCTTACCATGCCCAAGGAGGTGCCTCTGCAAGCCTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24508.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis