Browse Element(s) Details


OsAffx.24521.1.S1_at

Description tigr:9630.m02985
TID=OsAffx.24521.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g311005/11LITAF-domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31070Os.9275.1.S1_x_at11/112+18558372..18562655expressed protein
LOC_Os02g31074Os.54738.1.S1_at10/112+18563896..18567292expressed protein
LOC_Os02g31074Os.7658.1.S1_x_at1/112+18563896..18567292expressed protein
LOC_Os02g31080Os.14835.1.S1_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.56036.1.S1_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.14835.1.S1_x_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.14835.2.S1_at10/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31090NANA2+18584406..18585032hypothetical protein
LOC_Os02g31100Os.16026.1.S1_at11/112+18586654..18590521LITAF-domain-containing protein, putative, expressed
LOC_Os02g31100OsAffx.24521.1.S1_at5/112+18586654..18590521LITAF-domain-containing protein, putative, expressed
LOC_Os02g31110OsAffx.12305.1.S1_at10/112+18592697..18595331retrotransposon, putative, centromere-specific
LOC_Os02g31120Os.44163.1.S1_at1/112+18599144..18603219retrotransposon protein, putative, unclassified, expressed
LOC_Os02g31129OsAffx.16980.1.S1_at1/112+18608726..18610430NA
LOC_Os02g31129OsAffx.29429.1.S1_x_at1/112+18608726..18610430NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24521.1.S1_at--531--9311NONE
TCCCTCCGGTCCGAAGATACAATTT
NONE
OsAffx.24521.1.S1_at--291--6471Chr02:18588368..18588392 (25 bp)
GATACAATTTTTTTCCCAGTCCATG
LOC_Os02g31100
OsAffx.24521.1.S1_at--1142--10351Chr02:18588362..18588384 (23 bp)
TTTTTTCCCAGTCCATGGGAGGTCG
LOC_Os02g31100
OsAffx.24521.1.S1_at--604--4171NONE
CCCAGTCCATGGGAGGTCGAAGCCA
NONE
OsAffx.24521.1.S1_at--309--1991Chr02:18587134..18587158 (25 bp)
ACTGCCTCTGGCACAAATACCACTA
LOC_Os02g31100
OsAffx.24521.1.S1_at--162--4471Chr02:18587131..18587155 (25 bp)
GCCTCTGGCACAAATACCACTACTG
LOC_Os02g31100
OsAffx.24521.1.S1_at--533--311Chr02:18587118..18587142 (25 bp)
ATACCACTACTGCCCCAGCTGTGGG
LOC_Os02g31100
OsAffx.24521.1.S1_at--220--3651Chr02:18586617..18586952 (25 bp)
CTTCGCTGTGCCTGCTTTGTACTTC
NONE
OsAffx.24521.1.S1_at--549--4451Chr02:18586608..18586943 (25 bp)
GCCTGCTTTGTACTTCCGAAGGAAA
NONE
OsAffx.24521.1.S1_at--253--7811Chr02:18586561..18586585 (25 bp)
GGTCTAACGCGCGAGTTGCTAAACG
NONE
OsAffx.24521.1.S1_at--270--1831Chr02:18586555..18586579 (25 bp)
ACGCGCGAGTTGCTAAACGCGATAA
NONE
Target Sequence 
TCCCTCCGGTCCGAAGATACAATTTTTTTCCCAGTCCATGGGAGGTCGAAGCCAAGTCTAGCATCAGTTGTGGCTTGCAT
GATGCCCTTCATGATGGGCGTCTGCTTCCTTTGTCCTTCCATGGACTGCCTCTGGCACAAATACCACTACTGCCCCAGCT
GTGGGGAAAAGGTGGCTGAGTTCAAGAAGTCGGATCCGTGCCTCGTTGTGGATCCAACTCGCTGGTCTGAACCGAGCTTC
GCTGTGCCTGCTTTGTACTTCCGAAGGAAAAGAGTCAAGTTCTTTGGGGGGAGGTCTAACGCGCGAGTTGCTAAACGCGA
TAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis