Browse Element(s) Details


OsAffx.24568.1.S1_at

Description tigr:9630.m03265
TID=OsAffx.24568.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3432010/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34290OsAffx.14185.1.S1_x_at1/112+20511722..20512382hypothetical protein
LOC_Os02g34300OsAffx.25962.1.S1_at7/112+20513325..20521093transposon protein, putative, Mutator sub-class
LOC_Os02g34310OsAffx.15352.3.S1_at11/112+20523604..20525016hypothetical protein
LOC_Os02g34320OsAffx.24568.1.S1_at10/112+20529453..20532881Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g34330OsAffx.32166.1218.S1_x_at3/112+20536289..20537643hypothetical protein
LOC_Os02g34340OsAffx.22699.1.S1_x_at1/112+20539250..20541612retrotransposon protein, putative, unclassified
LOC_Os02g34340OsAffx.8201.1.S1_x_at1/112+20539250..20541612retrotransposon protein, putative, unclassified
LOC_Os02g34350NANA2+20543527..20548844Zinc knuckle family protein
LOC_Os02g34360OsAffx.12347.2.S1_at11/112+20550887..20551627hypothetical protein
LOC_Os02g34370OsAffx.12347.1.S1_at8/112+20556665..20559796expressed protein
LOC_Os02g34370OsAffx.12347.2.S1_at3/112+20556665..20559796expressed protein
LOC_Os02g34370OsAffx.27834.1.S1_at1/112+20556665..20559796expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24568.1.S1_at--797--4291Chr02:20529809..20529899 (25 bp)
CCTCACCAACAAGGCGGACAAGGCG
LOC_Os02g34320
OsAffx.24568.1.S1_at--836--3551Chr02:20529917..20529941 (25 bp)
CATCAGCTTCATCAGGAGCCTGGAG
LOC_Os02g34320
OsAffx.24568.1.S1_at--159--4711Chr02:20530219..20530243 (25 bp)
GCGGCGACCAGGCCTTCATCAACGT
LOC_Os02g34320
OsAffx.24568.1.S1_at--48--5771Chr02:20530284..20530308 (25 bp)
GACGTGCTGGAGAGGCACTCCATCG
LOC_Os02g34320
OsAffx.24568.1.S1_at--393--3911Chr02:20530290..20530314 (25 bp)
CTGGAGAGGCACTCCATCGACGTCG
LOC_Os02g34320
OsAffx.24568.1.S1_at--120--9411Chr02:20530312..20530336 (25 bp)
TCGTCACGGCGCAGATCGCGTCCGA
LOC_Os02g34320
OsAffx.24568.1.S1_at--753--3291NONE
CACACCAGCGTGGACAGAGAGCGTG
NONE
OsAffx.24568.1.S1_at--432--3431Chr02:20532669..20532693 (25 bp)
CAGAGAGCGTGGTATGTTCATGGAC
LOC_Os02g34320
OsAffx.24568.1.S1_at--624--6911Chr02:20532680..20532704 (25 bp)
GTATGTTCATGGACACTGCGACGGC
LOC_Os02g34320
OsAffx.24568.1.S1_at--451--6751Chr02:20532684..20532708 (25 bp)
GTTCATGGACACTGCGACGGCTGAA
LOC_Os02g34320
OsAffx.24568.1.S1_at--632--831Chr02:20532688..20532712 (25 bp)
ATGGACACTGCGACGGCTGAAGAGA
LOC_Os02g34320
Target Sequence 
CCTCACCAACAAGGCGGACAAGGCGACCATCGTCGGGGAGGCCATCAGCTTCATCAGGAGCCTGGAGGAGACGGTGGCCG
ACCTGGAGCGCCGCAAGAGGGAGAGGAACAGCCTCGCCGCGCGGTGCGCACGCCTCGGCCTCGGCGGGTCCTCCTCCTCG
TCCGCGCCACCGCCACCGCCACCCCCCGCCGCCGCCGACGACACCGCCGCCGTCATGCCGCCCGCGCCGGCGGTGCCGCC
ACCTGATGCCGCCGCGGTCACCGCGGGGCCAGAGCCTGCGCCGGCGCCGGCGCCGGGGACGTTGATGGTGTGGTCGGGGC
CGAGCGTGGTGCTGAACCTGTGCGGCGGCGACCAGGCCTTCATCAACGTGTCCGTGGCGAGGCGCCCCGGCGTGCTCACC
ATGATCGTGGACGTGCTGGAGAGGCACTCCATCGACGTCGTCACGGCGCAGATCGCGTCCGACCTGTCCCGGTCCCTGTT
CACCATCCACACCAGCGTGGACAGAGAGCGTGGTATGTTCATGGACACTGCGACGGCTGAAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis