Browse Element(s) Details


OsAffx.24592.1.S1_at

Description tigr:9630.m03441
TID=OsAffx.24592.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3609011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36070Os.5479.1.S1_x_at11/112+21684509..21686316Cytochrome P450 family protein, expressed
LOC_Os02g36080NANA2+21694310..21697006transposon protein, putative, unclassified
LOC_Os02g36090OsAffx.24592.1.S1_at11/112+21708358..21710843hypothetical protein
LOC_Os02g36100OsAffx.22848.3.S1_x_at3/112+21716410..21723477retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36100OsAffx.23640.3.S1_x_at2/112+21716410..21723477retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36100OsAffx.22848.4.S1_at2/112+21716410..21723477retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36100OsAffx.22848.4.S1_x_at1/112+21716410..21723477retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36100OsAffx.23640.1.S1_x_at1/112+21716410..21723477retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36110Os.19393.1.S1_at11/112+21734435..21736158Cytochrome P450 76C2, putative, expressed
LOC_Os02g36110Os.5479.1.S1_x_at1/112+21734435..21736158Cytochrome P450 76C2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24592.1.S1_at--592--10031Chr02:21709737..21709761 (25 bp)
TAGATTTTGCTGATCTGCACGCCAT
LOC_Os02g36090
OsAffx.24592.1.S1_at--446--4171Chr02:21709718..21709742 (25 bp)
CGCCATCTATCGTCGCGAAAAAATG
LOC_Os02g36090
OsAffx.24592.1.S1_at--179--2971Chr02:21709697..21709721 (25 bp)
AATGGACATAAACTTCGTGGCCGCA
LOC_Os02g36090
OsAffx.24592.1.S1_at--1087--2051Chr02:21709688..21709710 (23 bp)
ACTTCGTGGCCGCATGGTGCTTGAT
LOC_Os02g36090
OsAffx.24592.1.S1_at--824--5791Chr02:21709496..21709520 (25 bp)
GACGCTATCACCAAAATCCAACCAG
LOC_Os02g36090
OsAffx.24592.1.S1_at--1046--3231Chr02:21708922..21708946 (25 bp)
CAAGCAACCACGGTCCTCTGTGGGT
LOC_Os02g36090
OsAffx.24592.1.S1_at--1154--3271Chr02:21708693..21708717 (25 bp)
CAAAAGCCATGGTCCTCTGTGGGTA
LOC_Os02g36090
OsAffx.24592.1.S1_at--1122--771Chr02:21708470..21708494 (25 bp)
ATGTGCAGCACGATCTTTGTCACTT
LOC_Os02g36090
OsAffx.24592.1.S1_at--874--10251Chr02:21708455..21708479 (25 bp)
TTTGTCACTTCATCCACTGTGAGTG
LOC_Os02g36090
OsAffx.24592.1.S1_at--165--7031Chr02:21708428..21708452 (25 bp)
GTCATGTCAAAAGACGGTTCTTCGA
LOC_Os02g36090
OsAffx.24592.1.S1_at--597--10552Chr02:23043319..23043343 (25 bp)
TTCTTCGACCCAGAGAGCATCCTGG
NONE
Target Sequence 
TAGATTTTGCTGATCTGCACGCCATCTATCGTCGCGAAAAAATGGACATAAACTTCGTGGCCGCATGGTGCTTGATGCAA
TACATGGATGCTGAGAAGACAAAGCAATCTATCGGATATCTGGATCCAACAAGCATATGTCAAGCACAACATACCGTGAC
GCTATCACCAAAATCCAACCAGCTCAAGGTGTCACAAGCAACCACGGTCCTCTGTGGGTATTACACATGCGAATTCCTTA
GAGTTATTGGGAGATATAGGGTTAACGCAGAGGATAATAGAACATCGAACAAGCTTCGACGATACAGGCATCACAAATGT
ACAAAAGCCATGGTCCTCTGTGGGTATTACACATGTGAATTCCTCAGAGTTATTAGGAGATATAGGGTTAACGCAGAGGA
TTTGCCTAGAATAGAACATCGAACAAGCTTCGACGATACAGGCATTACAAATGTGCAGCACGATCTTTGTCACTTCATCC
ACTGTGAGTGCTGTCATGTCAAAAGACGGTTCTTCGACCCAGAGAGCATCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis