Browse Element(s) Details


OsAffx.24595.3.S1_at

Description tigr:9631.m01202
TID=OsAffx.24595.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1276011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12730Os.18287.1.S1_at11/113+6783729..6787461Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g12739Os.57571.1.S1_at3/113+6793945..6794535NA
LOC_Os03g12750OsAffx.25074.1.S1_at9/113+6795264..6798259hypothetical protein
LOC_Os03g12750Os.57571.1.S2_at4/113+6795264..6798259hypothetical protein
LOC_Os03g12760OsAffx.24595.3.S1_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.2.S1_x_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.2.S1_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.1.S1_s_at7/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12780OsAffx.12835.1.S1_at11/113+6823743..6824357hypothetical protein
LOC_Os03g12790OsAffx.25076.1.S1_at11/113+6833233..6835499MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24595.3.S1_at--513--3411Chr03:6806336..6806360 (25 bp)
CAGCAGCAGTTCGTGGCGTTGGCCA
LOC_Os03g12760
OsAffx.24595.3.S1_at--939--10751Chr03:6806224..6806332 (25 bp)
TTGTCCCCGGCCTCAAGAAGACAGA
LOC_Os03g12760
OsAffx.24595.3.S1_at--386--4451Chr03:6806096..6806120 (25 bp)
GCCTTCGAGAGCAAGTGCCGCATCA
LOC_Os03g12760
OsAffx.24595.3.S1_at--1044--7831Chr03:6806036..6806060 (25 bp)
GGTACCGACGATGGGTCCAGCTCCA
LOC_Os03g12760
OsAffx.24595.3.S1_at--820--6211Chr03:6805994..6806018 (25 bp)
GAGGCGAGCATCCATGGCAACACCG
LOC_Os03g12760
OsAffx.24595.3.S1_at--508--4011Chr03:6805971..6805995 (25 bp)
CGTCCTCCTGAAAATCTGCTGCAAG
LOC_Os03g12760
OsAffx.24595.3.S1_at--165--1071Chr03:6805938..6805962 (25 bp)
AGGGTTGCTGGTGATGATCCTCTCC
LOC_Os03g12760
OsAffx.24595.3.S1_at--695--1571Chr03:6805912..6805936 (25 bp)
AGCTCGAGAAGCAGGGACTGTCCAT
LOC_Os03g12760
OsAffx.24595.3.S1_at--1017--8111Chr03:6805898..6805922 (25 bp)
GGACTGTCCATCATAAACACCAGCG
LOC_Os03g12760
OsAffx.24595.3.S1_at--639--411Chr03:6805889..6805913 (25 bp)
ATCATAAACACCAGCGTCGTGCCGT
LOC_Os03g12760
OsAffx.24595.3.S1_at--280--9691Chr03:6805849..6805873 (25 bp)
TCAACATCACCATCACTGCAAAGGC
LOC_Os03g12760
Target Sequence 
CAGCAGCAGTTCGTGGCGTTGGCCACCATTGTCCCCGGCCTCAAGAAGACAGACAAGATCTCCCTCCTGGGGAGCACCAT
CGACTACGTGAAGCAGCTGGAGGAGAAGGTGAAGGCCCTGGAGGAAGGCTCGCGGAGAACGGCCGAGCCCACCACCGCCT
TCGAGAGCAAGTGCCGCATCACCGTCGACGACGACGATGGCGGCAGCGCCTCCTCCGGTACCGACGATGGGTCCAGCTCC
AGCTCCAGCCCGACCGTGGAGGCGAGCATCCATGGCAACACCGTCCTCCTGAAAATCTGCTGCAAGGAGAGGAGAGGGTT
GCTGGTGATGATCCTCTCCGAGCTCGAGAAGCAGGGACTGTCCATCATAAACACCAGCGTCGTGCCGTTCACGGATTCCT
GCCTCAACATCACCATCACTGCAAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24595.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis