Browse Element(s) Details


OsAffx.2463.1.S1_at

Description tigr:9629.m07178
TID=OsAffx.2463.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7256011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72510Os.6791.1.S1_x_at11/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72510Os.6791.1.S1_at11/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72510Os.46987.1.S1_x_at1/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72520Os.57312.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72520Os.49135.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72530Os.18922.2.S1_at11/111+42400970..42401831EF hand family protein, expressed
LOC_Os01g72540OsAffx.2462.1.S1_at11/111+42405531..42405986EF hand family protein
LOC_Os01g72550OsAffx.11828.1.S1_at11/111+42406965..42407405EF hand family protein
LOC_Os01g72560OsAffx.2463.1.S1_at11/111+42407915..42411891expressed protein
LOC_Os01g72570Os.10378.2.A1_s_at11/111+42413401..42422736expressed protein
LOC_Os01g72570Os.10378.3.S1_s_at11/111+42413401..42422736expressed protein
LOC_Os01g72570Os.10378.1.A1_at8/111+42413401..42422736expressed protein
LOC_Os01g72579NANA1+42429725..42430106NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2463.1.S1_at--301--1071Chr01:42410828..42410852 (25 bp)
AGGGAACGGGTGACATAGCTGAACA
LOC_Os01g72560
OsAffx.2463.1.S1_at--695--8991Chr01:42411044..42411068 (25 bp)
TGAAGACCGGATTCAGACTGCCCTG
LOC_Os01g72560
OsAffx.2463.1.S1_at--37--1351Chr01:42411085..42411109 (25 bp)
AGAGTCCTCATCAGGCTGTCGTGAA
LOC_Os01g72560
OsAffx.2463.1.S1_at--247--9651Chr01:42411122..42411146 (25 bp)
TCAGAGCCAGGCTGCTATGAAGAGT
LOC_Os01g72560
OsAffx.2463.1.S1_at--957--6651Chr01:42411204..42411228 (25 bp)
GTTGCTAATGTAGATTCCTTCGAAG
LOC_Os01g72560
OsAffx.2463.1.S1_at--1098--9971Chr01:42411234..42411258 (25 bp)
TACCATGCCATCGTTGAGCTTATCG
LOC_Os01g72560
OsAffx.2463.1.S1_at--878--2411Chr01:42411362..42411385 (24 bp)
AAAAGTTTTGCGAGGAGCGCGGCCA
LOC_Os01g72560
OsAffx.2463.1.S1_at--716--1651Chr01:42411376..42411400 (25 bp)
AGCGCGGCCAGGTGCAGTACAAGAT
LOC_Os01g72560
OsAffx.2463.1.S1_at--675--6451Chr01:42411398..42411422 (25 bp)
GATACCGTCGAAAAAAGCCCTGAAG
LOC_Os01g72560
OsAffx.2463.1.S1_at--698--1531Chr01:42411641..42411665 (25 bp)
AGCATCACACGGAGCAGGGACAGTT
LOC_Os01g72560
OsAffx.2463.1.S1_at--311--5851Chr01:42411735..42411759 (25 bp)
GACCATGGACTTCATCATGTACCTG
LOC_Os01g72560
Target Sequence 
AGGGAACGGGTGACATAGCTGAACAAGTTGGAGGATCTAAACGAGTGATTTATGAAGACCGGATTCAGACTGCCCTGGAG
AGCGAGAAGGATCAGAGTCCTCATCAGGCTGTCGTGAAGAGCGAGAAGGATCAGAGCCAGGCTGCTATGAAGAGTGAGAA
GGCTGATACGGAGAAACTCATTCAGTTCATGGAAGCAAATTATGAGAAGTATGTTGCTAATGTAGATTCCTTCGAAGATT
TCTACCATGCCATCGTTGAGCTTATCGAAAAGTTTTGCGAGGAGCGCGGCCAGGTGCAGTACAAGATACCGTCGAAAAAA
GCCCTGAAGGAAGCGTATGAGAAGCATCACACGGAGCAGGGACAGTTGAAGAGGGAGGAGTTCATCAAGATCGGCAAGGA
GGTGATCAGGCGGGACAGCTTCACCCTGGGCAAGGCGACCATGGACTTCATCATGTACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis