Browse Element(s) Details


OsAffx.24707.1.S1_at

Description tigr:9630.m04201
TID=OsAffx.24707.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4363011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43600Os.34081.1.S1_at1/112+26311628..26314557ribosomal protein L19 containing protein, expressed
LOC_Os02g43600Os.7743.2.S1_at1/112+26311628..26314557ribosomal protein L19 containing protein, expressed
LOC_Os02g43610NANA2+26316051..26316757hypothetical protein
LOC_Os02g43620Os.51696.1.S1_at11/112+26317491..26320266Major Facilitator Superfamily protein, expressed
LOC_Os02g43630OsAffx.24707.1.S1_at11/112+26323191..26323574hypothetical protein
LOC_Os02g43640NANA2+26329609..26331706expressed protein
LOC_Os02g43660Os.36684.1.S1_at11/112+26337715..26339599Plastocyanin-like domain containing protein, expressed
LOC_Os02g43670Os.54844.1.S1_at1/112+26342803..26347610Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24707.1.S1_at--115--831Chr02:26323520..26323544 (25 bp)
ATGGTTGGTCTGCACCAGACGACAC
LOC_Os02g43630
OsAffx.24707.1.S1_at--312--7811Chr02:26323514..26323538 (25 bp)
GGTCTGCACCAGACGACACAGGAAG
LOC_Os02g43630
OsAffx.24707.1.S1_at--142--5631Chr02:26323500..26323524 (25 bp)
GACACAGGAAGAACGGAGTCCACAA
LOC_Os02g43630
OsAffx.24707.1.S1_at--422--2751Chr02:26323492..26323516 (25 bp)
AAGAACGGAGTCCACAACAGCAGCG
LOC_Os02g43630
OsAffx.24707.1.S1_at--878--2671Chr02:26323461..26323485 (25 bp)
AAGCGACGCCAGAGTCTTCGAGGTG
LOC_Os02g43630
OsAffx.24707.1.S1_at--53--7991Chr02:26323424..26323448 (25 bp)
GGATGCGCCGGCCTTGATGCGACGG
LOC_Os02g43630
OsAffx.24707.1.S1_at--391--1631Chr02:26323372..26323396 (25 bp)
AGCGGCTGTGGTGGGCTCGATGCGA
LOC_Os02g43630
OsAffx.24707.1.S1_at--407--6351Chr02:26323354..26323378 (25 bp)
GATGCGACGGCTGCCGCTGTGACCT
LOC_Os02g43630
OsAffx.24707.1.S1_at--63--8692Chr11:26452754..26452773 (20 bp)
TGTGACCTCGATGCGACGGGATGCC
NONE
OsAffx.24707.1.S1_at--634--3911Chr02:26323258..26323282 (25 bp)
CGGCCTCGATGAGACATCGGCCGTG
LOC_Os02g43630
OsAffx.24707.1.S1_at--615--3991Chr02:26323237..26323261 (25 bp)
CGTGGCGGACTAGCTGCGATGCGAC
LOC_Os02g43630
Target Sequence 
ATGGTTGGTCTGCACCAGACGACACAGGAAGAACGGAGTCCACAACAGCAGCGGGGTGGAAGCGACGCCAGAGTCTTCGA
GGTGGATGCGACGACGGGATGCGCCGGCCTTGATGCGACGGCGGCCACAGCGGGCTCGATGCGATGGCAGCGGCTGTGGT
GGGCTCGATGCGACGGCTGCCGCTGTGACCTCGATGCGACGGGATGCCCCGGCCTCGATGCGACGCGCGGCCGCGGCGGC
CTCGATGCGACGTCGGCTGCGGCGGCCTCGATGAGACATCGGCCGTGGCGGACTAGCTGCGATGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis