Browse Element(s) Details


OsAffx.24729.1.S1_at

Description tigr:9630.m04341
TID=OsAffx.24729.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4483011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44790NANA2+27121097..27124453transposon protein, putative, unclassified
LOC_Os02g44800OsAffx.24727.1.S1_at11/112+27126566..27126784hypothetical protein
LOC_Os02g44810Os.9636.1.S1_s_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44810OsAffx.24728.1.S1_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44820Os.51119.1.S1_at11/112+27131359..27132416expressed protein
LOC_Os02g44820Os.14076.1.S1_s_at11/112+27131359..27132416expressed protein
LOC_Os02g44830OsAffx.24729.1.S1_at11/112+27147320..27148582hypothetical protein
LOC_Os02g44840NANA2+27149615..27150229hypothetical protein
LOC_Os02g44850OsAffx.12498.1.S1_at11/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44850OsAffx.25298.1.S1_at1/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44860Os.50931.1.S1_at11/112+27152484..27156895GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44870Os.12167.1.S1_at11/112+27159565..27161029Dehydrin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24729.1.S1_at--407--8391Chr02:27148527..27148551 (25 bp)
GGCGCAGTCTGCCTCTAGCTAACCT
LOC_Os02g44830
OsAffx.24729.1.S1_at--211--10011Chr02:27148512..27148536 (25 bp)
TAGCTAACCTCTTCCATCTACTCAT
LOC_Os02g44830
OsAffx.24729.1.S1_at--852--10671Chr02:27148501..27148525 (25 bp)
TTCCATCTACTCATGGACCAGGACC
LOC_Os02g44830
OsAffx.24729.1.S1_at--1135--9291Chr02:27148396..27148491 (25 bp)
TCCGCCCAGCTGACAAAGCTGTCTA
LOC_Os02g44830
OsAffx.24729.1.S1_at--627--5611Chr02:27148385..27148409 (25 bp)
GACAAAGCTGTCTACAAGACTACAA
LOC_Os02g44830
OsAffx.24729.1.S1_at--108--2771Chr02:27148370..27148394 (25 bp)
AAGACTACAAGTTCCTCTTGCTGTG
LOC_Os02g44830
OsAffx.24729.1.S1_at--128--3231Chr02:27148363..27148387 (25 bp)
CAAGTTCCTCTTGCTGTGTTGAATA
LOC_Os02g44830
OsAffx.24729.1.S1_at--863--831Chr02:27148339..27148363 (25 bp)
ATGGAGTACTTGAATTACGCATGAT
LOC_Os02g44830
OsAffx.24729.1.S1_at--1130--3131Chr02:27148327..27148351 (25 bp)
AATTACGCATGATGACCGGCCGGAA
LOC_Os02g44830
OsAffx.24729.1.S1_at--1003--8391Chr02:27148310..27148334 (25 bp)
GGCCGGAACCCACAATTTCTTTCTG
LOC_Os02g44830
OsAffx.24729.1.S1_at--24--3311Chr02:27148257..27148324 (25 bp)
CACAATTTCTTTCTGCGGTGAGTGT
LOC_Os02g44830
Target Sequence 
GGCGCAGTCTGCCTCTAGCTAACCTCTTCCATCTACTCATGGACCAGGACCAGGACTCACTCCGCCCAGCTGACAAAGCT
GTCTACAAGACTACAAGTTCCTCTTGCTGTGTTGAATATGGAGTACTTGAATTACGCATGATGACCGGCCGGAACCCACA
ATTTCTTTCTGCGGTGAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis