Browse Element(s) Details


OsAffx.24737.1.S1_at

Description tigr:9630.m04406
TID=OsAffx.24737.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4544010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45420OsAffx.2967.1.S1_at11/112+27615361..27616404AP2 domain containing protein, expressed
LOC_Os02g45429NANA2+27638381..27638680NA
LOC_Os02g45440OsAffx.24737.1.S1_at10/112+27640872..27642466hypothetical protein
LOC_Os02g45450Os.51078.1.S1_at11/112+27647066..27648337AP2 domain containing protein, expressed
LOC_Os02g45460Os.35302.1.S1_at11/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45460Os.6266.1.S1_s_at5/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45460Os.6266.1.S1_x_at1/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45470NANA2+27655556..27655789hypothetical protein
LOC_Os02g45480Os.23123.1.S1_at11/112+27656549..27661484Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g45480Os.23123.1.S2_at11/112+27656549..27661484Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g45490Os.49132.1.S1_at9/112+27662040..27665552expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24737.1.S1_at--879--9191Chr02:27640912..27640936 (25 bp)
TCCAACTCATTTCCATCGTTTTCTA
LOC_Os02g45440
OsAffx.24737.1.S1_at--431--3551Chr02:27640925..27640949 (25 bp)
CATCGTTTTCTACCCGCATGCTTTT
LOC_Os02g45440
OsAffx.24737.1.S1_at--595--10311NONE
TTTTCAAACTGCTGAACGCGGGCGT
NONE
OsAffx.24737.1.S1_at--352--7791Chr02:27641778..27641802 (25 bp)
GGTCACGGTGTATAGCCGCAACACA
LOC_Os02g45440
OsAffx.24737.1.S1_at--1162--7411Chr02:27641785..27641809 (25 bp)
GTGTATAGCCGCAACACAGTGGCGG
LOC_Os02g45440
OsAffx.24737.1.S1_at--675--7371Chr02:27641876..27642195 (25 bp)
GTGACGAGTGTCCACAGGCGTCCAC
LOC_Os02g45440
OsAffx.24737.1.S1_at--942--2111Chr02:27642184..27642208 (25 bp)
ACAGGCGTCCACAGCGGAGATGTTC
LOC_Os02g45440
OsAffx.24737.1.S1_at--885--3293Chr06:27479873..27479893 (21 bp)
CACAGCGGAGATGTTCTTGACGGCG
NONE
OsAffx.24737.1.S1_at--605--4191Chr02:27642238..27642262 (25 bp)
CCCGGCCACGACAGCGATGATGGAG
LOC_Os02g45440
OsAffx.24737.1.S1_at--203--9171Chr02:27642368..27642392 (25 bp)
TGCCCCGATGCATCGGACAGGAACG
LOC_Os02g45440
OsAffx.24737.1.S1_at--282--3551Chr02:27642378..27642402 (25 bp)
CATCGGACAGGAACGCGAGCAGGCC
LOC_Os02g45440
Target Sequence 
TCCAACTCATTTCCATCGTTTTCTACCCGCATGCTTTTCAAACTGCTGAACGCGGGCGTGGGCGGCGGGGGCGGCCGCAG
CGGCAGCGCTCTGAGAGGACCGGGGACGGTGGAAGGGGAGGAGGGGTTGACCCGAAGGTGCTGCGGTCGCTGCCGGTCAC
GGTGTATAGCCGCAACACAGTGGCGGCGGCTGCGAAGGAGGAGGAGGACGACGGCGTCGAGTGCGCGGTGTGCCTCGCGG
AGCTCGAGGAGGGTGACGAGTGTCCACAGGCGTCCACAGCGGAGATGTTCTTGACGGCGAAAGGGGACACGAGGTCATCC
CCGGCCACGACAGCGATGATGGAGGTCGGGCCGGTGGTGAGGCCGACGGTGGTGGAGAGGCGCGGGGTCGGGGTGATGGG
GAGTGCGGCGAGGAGGCGCGTGATTGGGTGTGCGAGCAGTAGCGTCTTGTGCCCCGATGCATCGGACAGGAACGCGAGCA
GGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis