Browse Element(s) Details


OsAffx.24748.1.S1_at

Description tigr:9630.m04477
TID=OsAffx.24748.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g461103/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46080Os.49254.1.S1_at10/112+28072953..28075904protein phosphatase 2C family protein, putative, expressed
LOC_Os02g46090Os.12641.1.S1_s_at11/112+28080860..28086282Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os02g46090OsAffx.12515.1.S1_at8/112+28080860..28086282Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os02g46100OsAffx.24747.1.S1_at11/112+28091110..28092152Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g46110OsAffx.4509.1.S1_s_at8/112+28099353..28101044hypothetical protein
LOC_Os02g46110OsAffx.24748.1.S1_at3/112+28099353..28101044hypothetical protein
LOC_Os02g46110OsAffx.4509.1.S1_x_at1/112+28099353..28101044hypothetical protein
LOC_Os02g46120Os.52348.1.S1_at10/112+28102765..28107558regulatory protein, putative, expressed
LOC_Os02g46130Os.12716.1.S1_a_at11/112+28107762..28113117Aspartyl-tRNA synthetase, putative, expressed
LOC_Os02g46140Os.47398.2.A1_at11/112+28116496..28118283expressed protein
LOC_Os02g46150Os.47398.1.S1_at11/112+28117822..28122244Uncharacterised protein family containing protein, expressed
LOC_Os02g46159NANA2+28123823..28124520NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24748.1.S1_at--106--5751Chr02:28100631..28100655 (25 bp)
GACGGCTTGATTCCTTCAATGGACT
NONE
OsAffx.24748.1.S1_at--688--5711NONE
GACTGCCATGCATTTCATACATTGA
NONE
OsAffx.24748.1.S1_at--1041--1453Chr02:28099548..28099572 (25 bp)
AGAAGAGGACCGTACATCCCACTGT
LOC_Os02g46110
OsAffx.24748.1.S1_at--375--1932Chr02:28099568..28099588 (21 bp)
ACTGTCTGGCCATAGCGCAACGAAA
LOC_Os02g46110
OsAffx.24748.1.S1_at--904--1831NONE
ACGAAAGTCTGTGCCGGATTACCAA
NONE
OsAffx.24748.1.S1_at--1041--2391NONE
AAAACAGCCGTTACCGAGGCGCGAT
NONE
OsAffx.24748.1.S1_at--646--3371NONE
CATAACGGAGTTCATTCGGGCTGCC
NONE
OsAffx.24748.1.S1_at--695--691NONE
ATGAGCCAGCCGACTTCTTATGGAG
NONE
OsAffx.24748.1.S1_at--601--10411NONE
TTATTGGCTGCCGTTTATCGCGTTC
NONE
OsAffx.24748.1.S1_at--902--9331NONE
TCGCCGATCCCGATGTGATATGGTT
NONE
OsAffx.24748.1.S1_at--121--3092Chr02:28099976..28100000 (25 bp)
AATCAATCTACAACCGAGCGACACT
LOC_Os02g46110
Target Sequence 
GACGGCTTGATTCCTTCAATGGACTGCCATGCATTTCATACATTGAAGCAGCAGAAATGAAATACGTTATGTACCTAGAA
GAGGACCGTACATCCCACTGTCTGGCCATAGCGCAACGAAAGTCTGTGCCGGATTACCAAAACAGCCGTTACCGAGGCGC
GATGCCCAGACAGGGGGATGAACGGACCTCCCCTAGGCTCATAACGGAGTTCATTCGGGCTGCCGCAATGGATGAGCCAG
CCGACTTCTTATGGAGGGGCCATAATGGCCCGAGCTGGCGCCTCGCGCGGGAATTACCCCGGGGTTATTGGCTGCCGTTT
ATCGCGTTCTCTTGTCGCCGATCCCGATGTGATATGGTTGGGGACTGTCGCCACTCTCCGGTGAAGATTGCCCTAAGATG
CAGGGCAATCAATCTACAACCGAGCGACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis