Browse Element(s) Details


OsAffx.24783.1.S1_at

Description tigr:9630.m04729
TID=OsAffx.24783.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4849011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48440OsAffx.14106.1.S1_at11/112+29658295..29658594hypothetical protein
LOC_Os02g48450Os.47737.1.S1_at11/112+29661874..29663793Caricain precursor, putative, expressed
LOC_Os02g48460Os.7122.1.S1_at11/112+29664832..29669151NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g48470Os.12751.1.S1_at11/112+29670153..29671174expressed protein
LOC_Os02g48480Os.38507.1.S1_at9/112+29671967..29672681expressed protein
LOC_Os02g48490OsAffx.24783.1.S1_at11/112+29679419..29680342hypothetical protein
LOC_Os02g48500OsAffx.12550.1.S1_at11/112+29684238..29684717hypothetical protein
LOC_Os02g48510OsAffx.25095.3.S1_x_at1/112+29688880..29690097hypothetical protein
LOC_Os02g48510OsAffx.25095.5.S1_x_at1/112+29688880..29690097hypothetical protein
LOC_Os02g48520OsAffx.12552.1.S1_at11/112+29693627..29693902hypothetical protein
LOC_Os02g48530NANA2+29702623..29703243hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24783.1.S1_at--913--3551Chr02:29680278..29680302 (25 bp)
CATCATCAAGGACAGATCCGCCACT
LOC_Os02g48490
OsAffx.24783.1.S1_at--642--551Chr02:29680263..29680287 (25 bp)
ATCCGCCACTCCTTGTAACTGTTGA
LOC_Os02g48490
OsAffx.24783.1.S1_at--691--9811Chr02:29680248..29680272 (25 bp)
TAACTGTTGAGGCTGGATCCGCTGC
LOC_Os02g48490
OsAffx.24783.1.S1_at--1038--4131Chr02:29680229..29680253 (25 bp)
CGCTGCTCCATCTAGTTGTGGTGAA
LOC_Os02g48490
OsAffx.24783.1.S1_at--562--8611Chr02:29680196..29680220 (25 bp)
TGGTGTTGGTCGTTCAAAGCTCAAG
LOC_Os02g48490
OsAffx.24783.1.S1_at--363--1771Chr02:29680151..29680175 (25 bp)
ACCTGTTGTGGCAGTGTTGCTCCAT
LOC_Os02g48490
OsAffx.24783.1.S1_at--878--5031Chr02:29680095..29680119 (25 bp)
GCAGATTGCCTGACATGTTGGTGGT
LOC_Os02g48490
OsAffx.24783.1.S1_at--428--991Chr02:29680064..29680088 (25 bp)
AGGAGGGTGCAATTTCCACCGCTGG
LOC_Os02g48490
OsAffx.24783.1.S1_at--727--3351Chr02:29679774..29680072 (25 bp)
CACCGCTGGTTATCTACATTCTTCA
LOC_Os02g48490
OsAffx.24783.1.S1_at--181--4791Chr02:29679664..29679688 (25 bp)
GCTCCTTGCTTACTCACAGAGGTGG
LOC_Os02g48490
OsAffx.24783.1.S1_at--859--6871Chr02:29679450..29679474 (25 bp)
GTATTCGGACAAATTCACTATCTTA
LOC_Os02g48490
Target Sequence 
CATCATCAAGGACAGATCCGCCACTCCTTGTAACTGTTGAGGCTGGATCCGCTGCTCCATCTAGTTGTGGTGAATCTGGT
GATGGTGTTGGTCGTTCAAAGCTCAAGGATGGACAGCCGAAGAGGCCACCTGTTGTGGCAGTGTTGCTCCATGGGGCAAG
CCGCCGCCGGACCCTAGCGTGGGGCAGATTGCCTGACATGTTGGTGGTGCAAACAGGAGGGTGCAATTTCCACCGCTGGT
TATCTACATTCTTCAAGTGTGACAAGGCAGCGATCGACGCTAGGGACGGGAAGGGAGCAACGGAGGCCCGACATAGAGAA
GAGGAGGAGGAGTCAGCGGCGCTCCTTGCTTACTCACAGAGGTGGCCAGGGCGGCAGAGAAGACGACGTAGAGAGTGTAT
TCGGACAAATTCACTATCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis