Browse Element(s) Details


OsAffx.24792.1.S1_at

Description tigr:9630.m04783
TID=OsAffx.24792.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4898011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48920OsAffx.3003.1.S1_at11/112+29915784..29917308Ubiquitin-conjugating enzyme family protein
LOC_Os02g48930NANA2+29918103..29921055transposon protein, putative, Mutator sub-class
LOC_Os02g48940Os.49661.1.S1_at3/112+29921620..29924744expressed protein
LOC_Os02g48950OsAffx.12556.1.S1_at11/112+29925758..29928010Ubiquitin-conjugating enzyme family protein
LOC_Os02g48964Os.14995.1.S1_a_at11/112+29928601..29935779WD-40 repeat family protein, putative, expressed
LOC_Os02g48964OsAffx.30727.1.S1_at1/112+29928601..29935779WD-40 repeat family protein, putative, expressed
LOC_Os02g48980Os.12153.1.S1_at11/112+29941372..29943689expressed protein
LOC_Os02g48980OsAffx.24792.1.S1_at11/112+29941372..29943689expressed protein
LOC_Os02g48990Os.27551.1.S1_at11/112+29944849..29950956CRAL/TRIO, N-terminus family protein, expressed
LOC_Os02g49000Os.45161.1.A1_x_at2/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.17536.1.S1_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.16451.1.A1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.8201.1.S1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.22699.1.S1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49010NANA2+29967219..29968833hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24792.1.S1_at--453--10491Chr02:29942726..29942747 (22 bp)
TTAAGAGAGATGCTTGTTGCTACAT
LOC_Os02g48980
OsAffx.24792.1.S1_at--618--6671Chr02:29942711..29942735 (25 bp)
GTTGCTACATTTATACCATTGTGAG
LOC_Os02g48980
OsAffx.24792.1.S1_at--77--1731Chr02:29942697..29942721 (25 bp)
ACCATTGTGAGGTGGGACTTTGACA
LOC_Os02g48980
OsAffx.24792.1.S1_at--766--3131Chr02:29942644..29942668 (25 bp)
AATTACAAACCACGCTTTGCTGCAA
LOC_Os02g48980
OsAffx.24792.1.S1_at--1092--10271Chr02:29942578..29942653 (25 bp)
TTTGCTGCAACTGCTTTTCCAAGAT
LOC_Os02g48980
OsAffx.24792.1.S1_at--887--2551Chr02:29942549..29942573 (25 bp)
AACTGTTTTATGATGGGTGGTGTGA
LOC_Os02g48980
OsAffx.24792.1.S1_at--508--4831Chr02:29942521..29942545 (25 bp)
GCTCAGAATCTATTGCACGCCAAAA
LOC_Os02g48980
OsAffx.24792.1.S1_at--376--1811Chr02:29942043..29942529 (25 bp)
ACGCCAAAAGTGCAGGAGTACTCCT
LOC_Os02g48980
OsAffx.24792.1.S1_at--305--991Chr02:29942030..29942054 (25 bp)
AGGAGTACTCCTTACCTTCTCTGCA
LOC_Os02g48980
OsAffx.24792.1.S1_at--462--3651Chr02:29942015..29942039 (25 bp)
CTTCTCTGCATGCTACAAGACTTTC
LOC_Os02g48980
OsAffx.24792.1.S1_at--722--2751Chr02:29941951..29942023 (25 bp)
AAGACTTTCAAATTGCCCTGTGAAT
LOC_Os02g48980
Target Sequence 
TTAAGAGAGATGCTTGTTGCTACATTTATACCATTGTGAGGTGGGACTTTGACAACAGGGTTAAGTATAACATACCAATG
GAAATTACAAACCACGCTTTGCTGCAACTGCTTTTCCAAGATTATGAACTGTTTTATGATGGGTGGTGTGAGGTGCTCAG
AATCTATTGCACGCCAAAAGTGCAGGAGTACTCCTTACCTTCTCTGCATGCTACAAGACTTTCAAATTGCCCTGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis