Browse Element(s) Details


OsAffx.24793.1.S1_at

Description tigr:9630.m04789
TID=OsAffx.24793.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=eif-2alpha kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4904011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48990Os.27551.1.S1_at11/112+29944849..29950956CRAL/TRIO, N-terminus family protein, expressed
LOC_Os02g49000Os.45161.1.A1_x_at2/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.17536.1.S1_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.16451.1.A1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.8201.1.S1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.22699.1.S1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49010NANA2+29967219..29968833hypothetical protein
LOC_Os02g49020NANA2+29969212..29969886hypothetical protein
LOC_Os02g49030NANA2+29971431..29972734tRNA synthetase class I family protein, putative
LOC_Os02g49040OsAffx.24793.1.S1_at11/112+29973929..29976865Protein kinase domain containing protein
LOC_Os02g49040Os.35524.1.S3_at1/112+29973929..29976865Protein kinase domain containing protein
LOC_Os02g49050Os.48108.1.S1_at11/112+29978690..29981759Endomembrane protein 70 containing protein, expressed
LOC_Os02g49060Os.52941.1.S1_at11/112+29986082..29992199amino acid transporter family protein, putative, expressed
LOC_Os02g49070Os.11648.1.S1_at11/112+29992395..29996914zinc finger and C2 domain protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016572biological_processhistone phosphorylation
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005819cellular_componentspindle
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24793.1.S1_at--614--3171Chr02:29976148..29976172 (25 bp)
AATTGATTCCCTTATCTTCATGCAC
LOC_Os02g49040
OsAffx.24793.1.S1_at--926--1771Chr02:29976171..29976195 (25 bp)
ACCGGCATGGCATCGTGCATCGAGA
LOC_Os02g49040
OsAffx.24793.1.S1_at--1109--7331Chr02:29976197..29976221 (25 bp)
GTGAAGCCGGGAAACATCCTCTTAG
LOC_Os02g49040
OsAffx.24793.1.S1_at--469--671Chr02:29976263..29976287 (25 bp)
ATGAACCATCACCTCCATATGTTTA
LOC_Os02g49040
OsAffx.24793.1.S1_at--1149--6751Chr02:29976299..29976323 (25 bp)
GTTACTACCGATGCTGATAATTCTG
LOC_Os02g49040
OsAffx.24793.1.S1_at--411--3371Chr02:29976350..29976374 (25 bp)
CAGCCACCATATATCATTGACTTCC
LOC_Os02g49040
OsAffx.24793.1.S1_at--266--7051Chr02:29976419..29976443 (25 bp)
GTAAACTCTTACGATCGTCACAATG
LOC_Os02g49040
OsAffx.24793.1.S1_at--949--9091Chr02:29976677..29976701 (25 bp)
TGCTCTGGAGGGAACTGACGTGCTT
LOC_Os02g49040
OsAffx.24793.1.S1_at--813--5451Chr02:29976688..29976712 (25 bp)
GAACTGACGTGCTTACGGACTGGAA
LOC_Os02g49040
OsAffx.24793.1.S1_at--693--8191Chr02:29976709..29976733 (25 bp)
GGAAGGGCGATTACAACCTGCTAAA
LOC_Os02g49040
OsAffx.24793.1.S1_at--535--9051Chr02:29976752..29976776 (25 bp)
TGCATGGGAGCGACTTTCAGCGGTA
LOC_Os02g49040
Target Sequence 
AATTGATTCCCTTATCTTCATGCACCGGCATGGCATCGTGCATCGAGATGTGAAGCCGGGAAACATCCTCTTAGAAGAAA
ACTTTACAGTAAAATTGGCTGATTTTGGAATAGGTATGAACCATCACCTCCATATGTTTAATATCATTCAAGTTACTACC
GATGCTGATAATTCTGTTTTCTCTTTTAGCCAAAAAAAAAAACAGCCACCATATATCATTGACTTCCATGGGGGTTGGTA
TGGCAGTCTGCCCTACCGGGCCCCAGAGCTTGTAAACTCTTACGATCGTCACAATGAAAAGGTTGATATTTTCTCCATTG
GAATGGTATATTTTGAATTACTCATGCCTGCTAAAAGAGAGAGGAAGAGAAAATTGAACAAGCTTAGTGAGACAATCAGG
AGGAAAAAGCAGGAATACGATCAGCTTGATATAGAATTTGATTTGGATAGTGCTCTGGAGGGAACTGACGTGCTTACGGA
CTGGAAGGGCGATTACAACCTGCTAAAGAAAATGACAAGTCCAAATGCATGGGAGCGACTTTCAGCGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24793.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis