Browse Element(s) Details


Os.48108.1.S1_at

Description gb:AK064958.1
DB_XREF= gi:32974976
TID=Os.48108.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001A11, full insert sequence.
FL= gb:AK064958.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4905011/11Endomembrane protein 70 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49000Os.45161.1.A1_x_at2/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.17536.1.S1_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.16451.1.A1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.8201.1.S1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.22699.1.S1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49010NANA2+29967219..29968833hypothetical protein
LOC_Os02g49020NANA2+29969212..29969886hypothetical protein
LOC_Os02g49030NANA2+29971431..29972734tRNA synthetase class I family protein, putative
LOC_Os02g49040OsAffx.24793.1.S1_at11/112+29973929..29976865Protein kinase domain containing protein
LOC_Os02g49040Os.35524.1.S3_at1/112+29973929..29976865Protein kinase domain containing protein
LOC_Os02g49050Os.48108.1.S1_at11/112+29978690..29981759Endomembrane protein 70 containing protein, expressed
LOC_Os02g49060Os.52941.1.S1_at11/112+29986082..29992199amino acid transporter family protein, putative, expressed
LOC_Os02g49070Os.11648.1.S1_at11/112+29992395..29996914zinc finger and C2 domain protein, putative, expressed
LOC_Os02g49080Os.7117.2.S1_a_at11/112+30005224..30009770KH domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48108.1.S1_at--1052--1551Chr02:29981194..29981218 (25 bp)
AGCTTTCTTTGCCTCTGGAGCAGTA
LOC_Os02g49050
Os.48108.1.S1_at--491--5031Chr02:29981213..29981237 (25 bp)
GCAGTAGCGCTTTATGTGTTCCTGT
LOC_Os02g49050
Os.48108.1.S1_at--136--9031Chr02:29981265..29981289 (25 bp)
TCAGAAGCTTGAGTGGCCCAGTTTC
LOC_Os02g49050
Os.48108.1.S1_at--1118--10291Chr02:29981286..29981310 (25 bp)
TTTCTGCTACGCTCTACATTGGATA
LOC_Os02g49050
Os.48108.1.S1_at--572--31Chr02:29981303..29981327 (25 bp)
ATTGGATATGCTTTCGTTGTCTCTC
LOC_Os02g49050
Os.48108.1.S1_at--852--6631Chr02:29981318..29981342 (25 bp)
GTTGTCTCTCTTGCAATTATGCTGG
LOC_Os02g49050
Os.48108.1.S1_at--668--151Chr02:29981333..29981357 (25 bp)
ATTATGCTGGCTACTGGGACTGTTG
LOC_Os02g49050
Os.48108.1.S1_at--494--5731Chr02:29981350..29981374 (25 bp)
GACTGTTGGGTTCCTGACATCATTC
LOC_Os02g49050
Os.48108.1.S1_at--1113--3831Chr02:29981492..29981515 (24 bp)
CTGAAGGCCCTTTACACAATTGTGA
LOC_Os02g49050
Os.48108.1.S1_at--922--7391Chr02:29981512..29981536 (25 bp)
GTGATGTCTTCCTTATGTAGCTAAT
LOC_Os02g49050
Os.48108.1.S1_at--525--10451Chr02:29981536..29981560 (25 bp)
TTACCGGGACTATTGTACCACGATG
LOC_Os02g49050
Target Sequence 
AGCTTTCTTTGCCTCTGGAGCAGTAGCGCTTTATGTGTTCCTGTACTCTATCAACTACTTGGTGTTTGATCTCAGAAGCT
TGAGTGGCCCAGTTTCTGCTACGCTCTACATTGGATATGCTTTCGTTGTCTCTCTTGCAATTATGCTGGCTACTGGGACT
GTTGGGTTCCTGACATCATTCTCTTTCGTCCACTACCTTTTCTCATCAGTTAAGATTGATTGAAGACCATACCTTACAAA
TCTCCAAGGATGACTGTACACTGAATCACTCTAAAGCGGCAATGATTTGATCATGGCATCTGAAGGCCCTTTACACAATT
GTGATGTCTTCCTTATGTAGCTAATTACCGGGACTATTGTACCACGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis