Browse Element(s) Details


Os.7117.2.S1_a_at

Description gb:CB645017
DB_XREF= gi:29640008
DB_XREF=OSJNEb06H16.f
CLONE=OSJNEb06H16
TID=Os.7117.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7117 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200425.1 (A.thaliana) RNA-binding protein-like (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4908011/11KH domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49050Os.48108.1.S1_at11/112+29978690..29981759Endomembrane protein 70 containing protein, expressed
LOC_Os02g49060Os.52941.1.S1_at11/112+29986082..29992199amino acid transporter family protein, putative, expressed
LOC_Os02g49070Os.11648.1.S1_at11/112+29992395..29996914zinc finger and C2 domain protein, putative, expressed
LOC_Os02g49080Os.7117.2.S1_a_at11/112+30005224..30009770KH domain-containing protein, putative, expressed
LOC_Os02g49090Os.26580.1.A1_at10/112+30010129..30020066IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os02g49090OsAffx.23696.1.S1_x_at1/112+30010129..30020066IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os02g49100OsAffx.29218.1.S1_s_at8/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.55650.1.A1_at7/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.21756.5.A1_x_at4/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.7307.3.S1_x_at2/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.52979.1.S1_at2/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.22646.1.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.2057.3.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.22646.1.S1_x_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.13325.1.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49110OsAffx.5954.4.S1_x_at7/112+30026085..30027236hypothetical protein
LOC_Os02g49120OsAffx.5954.1.S1_x_at6/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49120OsAffx.5954.5.S1_x_at3/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49120OsAffx.5954.3.S1_x_at3/112+30028827..30033963retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7117.2.S1_a_at--529--971Chr02:30005441..30005954 (25 bp)
AGGAGAAGTACCTCGCGGAGCTGCT
LOC_Os02g49080
Os.7117.2.S1_a_at--778--4791Chr02:30005991..30006015 (25 bp)
GCTCCCTAATAGTGTACGGCTGCTG
LOC_Os02g49080
Os.7117.2.S1_a_at--802--10411Chr02:30008230..30008254 (25 bp)
TTATAGCTGGCGTGGAGGTTCTCAA
LOC_Os02g49080
Os.7117.2.S1_a_at--708--2911Chr02:30008253..30008277 (25 bp)
AAGGCAGTTCCTCTGGACTAATTGT
LOC_Os02g49080
Os.7117.2.S1_a_at--828--4511Chr02:30008430..30008454 (25 bp)
GCCGCATCCTTGGTCCTAGAGGAAA
LOC_Os02g49080
Os.7117.2.S1_a_at--516--1791Chr02:30008480..30008504 (25 bp)
ACCGACTGCCGTGTGCTTATAAGAG
LOC_Os02g49080
Os.7117.2.S1_a_at--916--3831Chr02:30008925..30008949 (25 bp)
CTGAATGAACCCCTGCACATATTGG
LOC_Os02g49080
Os.7117.2.S1_a_at--807--10211Chr02:30008975..30008999 (25 bp)
TATTGATACCCGTCTGATCCAAGCC
LOC_Os02g49080
Os.7117.2.S1_a_at--1149--6351Chr02:30008990..30009014 (25 bp)
GATCCAAGCCCGTGATATCCTTGAA
LOC_Os02g49080
Os.7117.2.S1_a_at--151--9491Chr02:30009017..30009165 (25 bp)
TCTGCTGAAGCCTGTGGACGAGTCT
LOC_Os02g49080
Os.7117.2.S1_a_at--721--8111Chr02:30009156..30009180 (25 bp)
GGACGAGTCTCAGGACTTCTTCAAG
LOC_Os02g49080
Target Sequence 
AGGAGAAGTACCTCGCGGAGCTGCTAGCGGAGCGGCACAAGCTGAGCCCGTTCATCCCAGTGCTCCCTAATAGTGTACGG
CTGCTGAATCAAGGGTTCACCAGCTTATAGCTGGCGTGGAGGTTCTCAAGGCAGTTCCTCTGGACTAATTGTTAAGAAAA
CCATGAAGGTTGATATCCCAGTAGACAAATATCCCACATTCNATTTCGTTGGCCGCATCCTTGGTCCTAGAGGAAATTCT
TTGAAGCGAGTGGAAGCAACCACCGACTGCCGTGTGCTTATAAGAGGTCGGGGAAGCATTAAAGATCCAGCTCGGGAGGA
CATGATGCGAGGGAAACCAGGTTATGAACATCTGAATGAACCCCTGCACATATTGGTTGAGGCAGAACTGCCTGTTGAAA
TTATTGATACCCGTCTGATCCAAGCCCGTGATATCCTTGAAGATCTGCTGAAGCCTGTGGACGAGTCTCAGGACTTCTTC
AAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7117.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis