Browse Element(s) Details


Os.26580.1.A1_at

Description gb:AK122035.1
DB_XREF= gi:37991681
TID=Os.26580.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-210-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112L23, full insert sequence.
FL= gb:AK122035.1 gb:AK061221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4909010/11IMP dehydrogenase/GMP reductase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49060Os.52941.1.S1_at11/112+29986082..29992199amino acid transporter family protein, putative, expressed
LOC_Os02g49070Os.11648.1.S1_at11/112+29992395..29996914zinc finger and C2 domain protein, putative, expressed
LOC_Os02g49080Os.7117.2.S1_a_at11/112+30005224..30009770KH domain-containing protein, putative, expressed
LOC_Os02g49090Os.26580.1.A1_at10/112+30010129..30020066IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os02g49090OsAffx.23696.1.S1_x_at1/112+30010129..30020066IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os02g49100OsAffx.29218.1.S1_s_at8/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.55650.1.A1_at7/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.21756.5.A1_x_at4/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.7307.3.S1_x_at2/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.52979.1.S1_at2/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.22646.1.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.2057.3.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.22646.1.S1_x_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.13325.1.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49110OsAffx.5954.4.S1_x_at7/112+30026085..30027236hypothetical protein
LOC_Os02g49120OsAffx.5954.1.S1_x_at6/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49120OsAffx.5954.5.S1_x_at3/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49120OsAffx.5954.3.S1_x_at3/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49130Os.27311.1.A1_at11/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.12558.1.S1_at9/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.8676.1.S1_at1/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.3509.1.S1_at1/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.22651.3.A1_x_at1/112+30038350..30041663expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009965biological_processleaf morphogenesis
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26580.1.A1_at--43--6671Chr02:30010696..30010720 (25 bp)
GTTGACATTGCTACTGATACGCCGC
LOC_Os02g49090
Os.26580.1.A1_at--775--8451Chr02:30010641..30010665 (25 bp)
TGGCGATAAATCCAACCGATCCGGT
LOC_Os02g49090
Os.26580.1.A1_at--401--8851Chr02:30010617..30010641 (25 bp)
TGATCGCCATGCACGTGAAGCCTAT
LOC_Os02g49090
Os.26580.1.A1_at--1003--5411Chr02:30010601..30010625 (25 bp)
GAAGCCTATTTTCGAGCAAGTCTAC
LOC_Os02g49090
Os.26580.1.A1_at--212--2851Chr02:30010584..30010608 (25 bp)
AAGTCTACAATGCATTGCTCCACCT
LOC_Os02g49090
Os.26580.1.A1_at--143--5331Chr02:30010328..30010352 (25 bp)
GAAGTGCCCCTTGCTGTAAACTAGG
LOC_Os02g49090
Os.26580.1.A1_at--463--1211Chr02:30010267..30010291 (25 bp)
AGTTTAGTGTCTACTAGTTCGCCCT
LOC_Os02g49090
Os.26580.1.A1_at--808--1231Chr02:30010252..30010276 (25 bp)
AGTTCGCCCTCTTGAGCCAGTAATG
LOC_Os02g49090
Os.26580.1.A1_at--782--6951Chr02:30010208..30010232 (25 bp)
GTAGCCCCTGCAGCTTAAGATGGTA
LOC_Os02g49090
Os.26580.1.A1_at--273--1291Chr02:30010191..30010215 (25 bp)
AGATGGTAATTTGTAGCGGCCGCTT
LOC_Os02g49090
Os.26580.1.A1_at--229--1631NONE
AGCGGCCGCTTTACAGTGAGTGACA
NONE
Target Sequence 
GTTGACATTGCTACTGATACGCCGCGGAAGATTCAGTGGATGACAGATGTCGCTATGGCGATAAATCCAACCGATCCGGT
GATCGCCATGCACGTGAAGCCTATTTTCGAGCAAGTCTACAATGCATTGCTCCACCTACGCTCGCTCCCCACCACCAGCC
CATCAGACAGCACCAGCATCCGCTTATTCATGCATGTAATTAATTCTGTTCTGCTTAGCTACAAGTGATTCTAGGCATCT
ATTGAGGTTCTGGAACTGAGATGCATGGTCTACTACCGTTGTATAGAGAAATTTTGGTAAGCGAAGGAAACCCAATAGGG
CATTCCATTGCCTATGAGGCTGTGACCGAGAACACTAGCAGGAGGGTGGAAGTGCCCCTTGCTGTAAACTAGGCTTGTAA
CAGTCTTAATTTGGAGTATTTCAATATCCAGTTTAGTGTCTACTAGTTCGCCCTCTTGAGCCAGTAATGCTCAATCAGGC
ACACAACTGTAGCCCCTGCAGCTTAAGATGGTAATTTGTAGCGGCCGCTTTACAGTGAGTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26580.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis