Browse Element(s) Details


Os.11648.1.S1_at

Description gb:AK066163.1
DB_XREF= gi:32976181
TID=Os.11648.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11648 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013051C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013051C01, full insert sequence.
FL= gb:AK066163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4907011/11zinc finger and C2 domain protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49010NANA2+29967219..29968833hypothetical protein
LOC_Os02g49020NANA2+29969212..29969886hypothetical protein
LOC_Os02g49030NANA2+29971431..29972734tRNA synthetase class I family protein, putative
LOC_Os02g49040OsAffx.24793.1.S1_at11/112+29973929..29976865Protein kinase domain containing protein
LOC_Os02g49040Os.35524.1.S3_at1/112+29973929..29976865Protein kinase domain containing protein
LOC_Os02g49050Os.48108.1.S1_at11/112+29978690..29981759Endomembrane protein 70 containing protein, expressed
LOC_Os02g49060Os.52941.1.S1_at11/112+29986082..29992199amino acid transporter family protein, putative, expressed
LOC_Os02g49070Os.11648.1.S1_at11/112+29992395..29996914zinc finger and C2 domain protein, putative, expressed
LOC_Os02g49080Os.7117.2.S1_a_at11/112+30005224..30009770KH domain-containing protein, putative, expressed
LOC_Os02g49090Os.26580.1.A1_at10/112+30010129..30020066IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os02g49090OsAffx.23696.1.S1_x_at1/112+30010129..30020066IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os02g49100OsAffx.29218.1.S1_s_at8/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.55650.1.A1_at7/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.21756.5.A1_x_at4/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.7307.3.S1_x_at2/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.52979.1.S1_at2/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.22646.1.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.2057.3.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.22646.1.S1_x_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.13325.1.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005794cellular_componentGolgi apparatus
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005543molecular_functionphospholipid binding
GO:0008060molecular_functionARF GTPase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11648.1.S1_at--106--3151Chr02:29993721..29993745 (25 bp)
AATTCCTCGAAATTATGGACCTCTT
LOC_Os02g49070
Os.11648.1.S1_at--370--5851Chr02:29992914..29992938 (25 bp)
GACCATGATACGTTCTCTGCTGATG
LOC_Os02g49070
Os.11648.1.S1_at--16--4031Chr02:29992843..29992867 (25 bp)
CGTCATGGCCTTTGGAGATCCCTCG
LOC_Os02g49070
Os.11648.1.S1_at--143--1291Chr02:29992828..29992852 (25 bp)
AGATCCCTCGCGTGTTGGTGACATG
LOC_Os02g49070
Os.11648.1.S1_at--171--6751Chr02:29992789..29992813 (25 bp)
GTTCATGACCAAAGACAATGCCCTG
LOC_Os02g49070
Os.11648.1.S1_at--787--5071Chr02:29992754..29992778 (25 bp)
GCACTGTCAATGTTGTGTCGGGCAA
LOC_Os02g49070
Os.11648.1.S1_at--788--3071Chr02:29992641..29992665 (25 bp)
AATAAAGCTCGATTGGTTCTCTGCC
LOC_Os02g49070
Os.11648.1.S1_at--918--2951Chr02:29992574..29992598 (25 bp)
AATGGCTTCAAATCCCGTGTACTTA
LOC_Os02g49070
Os.11648.1.S1_at--1107--7431Chr02:29992558..29992582 (25 bp)
GTGTACTTACTGAATCTCTGTCTTC
LOC_Os02g49070
Os.11648.1.S1_at--490--10171Chr02:29992486..29992510 (25 bp)
TATCATGTTGTAATCCGTCGGCTGC
LOC_Os02g49070
Os.11648.1.S1_at--516--8331Chr02:29992467..29992491 (25 bp)
GGCTGCACTCACGACCAATTATATT
LOC_Os02g49070
Target Sequence 
AATTCCTCGAAATTATGGACCTCTTAAACTTGAAGTATACGACCATGATACGTTCTCTGCTGATGATATCATGGGGGNAA
GCGGAGATAGATCTTCAACCAATGATCACAGNCCGTCATGGCCTTTGGAGATCCCTCGCGTGTTGGTGACATGCAAATTG
GAAGGTGGTTCATGACCAAAGACAATGCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAAAACANGGA
AGTGCATCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATGGGTTCCAATACCCTAGATTAATA
AAGCTCGATTGGTTCTCTGCCNAAAAAAATTACTCAAGAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTCAAATCCCG
TGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCACCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTT
GTAATCCGTCGGCTGCACTCACGACCAATTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis