Browse Element(s) Details


OsAffx.24814.1.S1_at

Description tigr:9630.m04957
TID=OsAffx.24814.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5059011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50550Os.6049.1.S1_at11/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50550Os.52837.1.S1_x_at1/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50550Os.52837.1.S1_at1/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50560Os.50871.1.S1_at11/112+30866902..30877002DEAD/DEAH box helicase, putative, expressed
LOC_Os02g50570Os.5163.1.S1_at11/112+30876083..30880539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g50580OsAffx.3027.1.S1_at11/112+30885429..30886141hypothetical protein
LOC_Os02g50590OsAffx.24814.1.S1_at11/112+30889298..30892658hypothetical protein
LOC_Os02g50600Os.26079.1.S1_at11/112+30893712..30895431glycosyl transferase family 8 protein, putative, expressed
LOC_Os02g50610Os.31535.1.A1_at1/112+30898909..30903290hypothetical protein
LOC_Os02g50620Os.10143.1.S1_at11/112+30912914..30917073Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24814.1.S1_at--830--2951Chr02:30889639..30889662 (24 bp)
AAGGCCACTCATCTGTCAATAATTC
LOC_Os02g50590
OsAffx.24814.1.S1_at--68--7631Chr02:30889667..30889691 (25 bp)
GGGAAAATTCGGTCCATCAAATCCA
LOC_Os02g50590
OsAffx.24814.1.S1_at--795--2351Chr02:30889691..30889715 (25 bp)
AAACCCCATATGTGGCTGGGCTTCA
LOC_Os02g50590
OsAffx.24814.1.S1_at--823--3891Chr02:30889706..30889730 (25 bp)
CTGGGCTTCAGGAAGCTTTTGCCTA
LOC_Os02g50590
OsAffx.24814.1.S1_at--700--4451Chr02:30889726..30889750 (25 bp)
GCCTAGAGCTAGTTGGGCCTGACCA
LOC_Os02g50590
OsAffx.24814.1.S1_at--200--1151Chr02:30889769..30890169 (25 bp)
AGTCTCCCGGACAAGACCAGTCTTG
LOC_Os02g50590
OsAffx.24814.1.S1_at--882--6151Chr02:30890176..30890200 (25 bp)
GAGGTTTGCATCTGTGACAATTCCA
LOC_Os02g50590
OsAffx.24814.1.S1_at--801--5611Chr02:30891507..30891531 (25 bp)
GACAAAATACCCGATTCTTTTCAGA
LOC_Os02g50590
OsAffx.24814.1.S1_at--81--831Chr02:30891553..30891577 (25 bp)
ATGGATTAATTGCTGTACGCTTCAA
LOC_Os02g50590
OsAffx.24814.1.S1_at--431--7711Chr02:30892520..30892544 (25 bp)
GGGTGATGTCAACCATCTAGCTTGT
LOC_Os02g50590
OsAffx.24814.1.S1_at--984--7391Chr02:30892543..30892567 (25 bp)
GTGATGTCAAGGTTTTTGCTGTTCT
LOC_Os02g50590
Target Sequence 
AAGGCCACTCATCTGTCAATAATTCTTGTGGGAAAATTCGGTCCATCAAATCCAAACCCCATATGTGGCTGGGCTTCAGG
AAGCTTTTGCCTAGAGCTAGTTGGGCCTGACCATGGCAACGAGCTACTCCCAGTCTCCCGGACAAGACCAGTCTTGCAAC
GTGAGGTTTGCATCTGTGACAATTCCATAAACTTAGGAGACAAGCAAGGACAAAATACCCGATTCTTTTCAGATTATTTA
ACTGGATTATTAGAATGGATTAATTGCTGTACGCTTCAAAAAATATGGGGTGATGTCAACCATCTAGCTTGTGATGTCAA
GGTTTTTGCTGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis