Browse Element(s) Details


OsAffx.24884.1.S1_at

Description tigr:9630.m05501
TID=OsAffx.24884.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5536011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55340Os.48038.1.S1_at11/112+33879979..33887758HEAT repeat family protein, expressed
LOC_Os02g55350OsAffx.199.1.S1_at1/112+33894920..33902185retrotransposon protein, putative, unclassified
LOC_Os02g55360OsAffx.24884.1.S1_at11/112+33903146..33903442hypothetical protein
LOC_Os02g55370Os.46185.1.S1_x_at11/112+33908140..3390877260S ribosomal protein L39, putative, expressed
LOC_Os02g55370Os.11168.1.S1_x_at6/112+33908140..3390877260S ribosomal protein L39, putative, expressed
LOC_Os02g55380NANA2+33914371..33915144AP2 domain containing protein, expressed
LOC_Os02g55390Os.46185.1.S1_x_at3/112+33922540..3392289260S ribosomal protein L39, putative
LOC_Os02g55390Os.11168.1.S1_x_at1/112+33922540..3392289260S ribosomal protein L39, putative
LOC_Os02g55400Os.50459.1.S1_at10/112+33925949..33930287ATPase 8, plasma membrane-type, putative, expressed
LOC_Os02g55400OsAffx.5813.1.S1_x_at1/112+33925949..33930287ATPase 8, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24884.1.S1_at--893--3791Chr02:33903200..33903224 (25 bp)
CTCCTGCGTTACCAGTTCAAGACAG
LOC_Os02g55360
OsAffx.24884.1.S1_at--173--10511Chr02:33903215..33903239 (25 bp)
TTCAAGACAGTGAGGCCACCGACGA
LOC_Os02g55360
OsAffx.24884.1.S1_at--399--8451Chr02:33903228..33903252 (25 bp)
GGCCACCGACGAAGGACATCGTGGA
LOC_Os02g55360
OsAffx.24884.1.S1_at--33--511Chr02:33903245..33903269 (25 bp)
ATCGTGGAGCTCCTGCCCGAGGGAG
LOC_Os02g55360
OsAffx.24884.1.S1_at--739--8011Chr02:33903266..33903290 (25 bp)
GGAGGGTCTCGCACCGTCCCAAGGA
LOC_Os02g55360
OsAffx.24884.1.S1_at--718--9351Chr02:33903274..33903298 (25 bp)
TCGCACCGTCCCAAGGAGCGTGCTG
LOC_Os02g55360
OsAffx.24884.1.S1_at--442--5891Chr02:33903289..33903313 (25 bp)
GAGCGTGCTGCACGGAAGCGCGCTT
LOC_Os02g55360
OsAffx.24884.1.S1_at--715--1651Chr02:33903305..33903329 (25 bp)
AGCGCGCTTGCGGACGAGAACAAGT
LOC_Os02g55360
OsAffx.24884.1.S1_at--734--8111Chr02:33903316..33903340 (25 bp)
GGACGAGAACAAGTTCAAGTCCCTG
LOC_Os02g55360
OsAffx.24884.1.S1_at--1101--1131Chr02:33903327..33903351 (25 bp)
AGTTCAAGTCCCTGAGCAAGATGGA
LOC_Os02g55360
OsAffx.24884.1.S1_at--1092--4271Chr02:33903337..33903361 (25 bp)
CCTGAGCAAGATGGAGCCGGCGATC
LOC_Os02g55360
Target Sequence 
CTCCTGCGTTACCAGTTCAAGACAGTGAGGCCACCGACGAAGGACATCGTGGAGCTCCTGCCCGAGGGAGGGTCTCGCAC
CGTCCCAAGGAGCGTGCTGCACGGAAGCGCGCTTGCGGACGAGAACAAGTTCAAGTCCCTGAGCAAGATGGAGCCGGCGA
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis