Browse Element(s) Details


OsAffx.24901.1.S1_at

Description tigr:9630.m05650
TID=OsAffx.24901.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5689011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56860Os.17584.1.S1_at11/112+34847918..34849684Chalcone and stilbene synthases, C-terminal domain containing protein, expressed
LOC_Os02g56870OsAffx.12675.1.S1_at11/112+34855907..34856271hypothetical protein
LOC_Os02g56880Os.51812.1.S1_at11/112+34856686..34867013Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os02g56880OsAffx.1264.1.S1_x_at1/112+34856686..34867013Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os02g56890OsAffx.24901.1.S1_at11/112+34871730..34871975hypothetical protein
LOC_Os02g56900Os.7664.1.S1_at10/112+34873717..34875127expressed protein
LOC_Os02g56910OsAffx.12676.1.S1_at11/112+34876958..34882553Sterol esterification protein, putative
LOC_Os02g56920Os.27093.1.S1_at11/112+34883792..34888004CER1 protein, putative, expressed
LOC_Os02g56930Os.7078.1.S1_at11/112+34894566..34895380expressed protein
LOC_Os02g56940NANA2+34895801..34897381expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24901.1.S1_at--1030--9251Chr02:34871895..34871919 (25 bp)
TCCTGCCACCAACAACAAGCATTGT
LOC_Os02g56890
OsAffx.24901.1.S1_at--702--4411Chr02:34871891..34871915 (25 bp)
GCCACCAACAACAAGCATTGTGTAG
LOC_Os02g56890
OsAffx.24901.1.S1_at--689--2711Chr02:34871879..34871903 (25 bp)
AAGCATTGTGTAGACATTTGCATCA
LOC_Os02g56890
OsAffx.24901.1.S1_at--380--10831Chr02:34871874..34871898 (25 bp)
TTGTGTAGACATTTGCATCATTTTA
LOC_Os02g56890
OsAffx.24901.1.S1_at--634--6951Chr02:34871870..34871894 (25 bp)
GTAGACATTTGCATCATTTTAAACA
LOC_Os02g56890
OsAffx.24901.1.S1_at--808--5671Chr02:34871867..34871891 (25 bp)
GACATTTGCATCATTTTAAACAAGC
LOC_Os02g56890
OsAffx.24901.1.S1_at--500--4951Chr02:34871860..34871884 (25 bp)
GCATCATTTTAAACAAGCAACTTCT
LOC_Os02g56890
OsAffx.24901.1.S1_at--942--2031Chr02:34871841..34871865 (25 bp)
ACTTCTTGGGCCTCTGAGGGAGAAA
LOC_Os02g56890
OsAffx.24901.1.S1_at--978--9551Chr02:34871838..34871862 (25 bp)
TCTTGGGCCTCTGAGGGAGAAAAAA
LOC_Os02g56890
OsAffx.24901.1.S1_at--331--9311Chr02:34871811..34871835 (25 bp)
TCCCACTATGGAAAAATTCAGCGTT
LOC_Os02g56890
OsAffx.24901.1.S1_at--899--10071Chr02:34871805..34871829 (25 bp)
TATGGAAAAATTCAGCGTTGTGTGC
LOC_Os02g56890
Target Sequence 
TCCTGCCACCAACAACAAGCATTGTGTAGACATTTGCATCATTTTAAACAAGCAACTTCTTGGGCCTCTGAGGGAGAAAA
AAAATCCCACTATGGAAAAATTCAGCGTTGTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis