Browse Element(s) Details


OsAffx.24926.1.S1_x_at

Description tigr:9630.m00079
TID=OsAffx.24926.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1203011/11Leucine Rich Repeat family protein
LOC_Os02g1198011/11Leucine Rich Repeat family protein, expressed
LOC_Os02g0180011/11Leucine Rich Repeat family protein, expressed
LOC_Os02g120106/11Leucine Rich Repeat family protein
LOC_Os11g409701/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12000OsAffx.11994.1.S1_at11/112+6222957..6223378hypothetical protein
LOC_Os02g12010OsAffx.24926.2.S1_at11/112+6228456..6231985Leucine Rich Repeat family protein
LOC_Os02g12010OsAffx.24926.1.S1_x_at6/112+6228456..6231985Leucine Rich Repeat family protein
LOC_Os02g12020OsAffx.24203.1.S1_at11/112+6236706..6237184hypothetical protein
LOC_Os02g12030OsAffx.24926.1.S1_x_at11/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12030OsAffx.24926.3.S1_at1/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12040OsAffx.24926.3.S1_at11/112+6254346..6256373Leucine Rich Repeat family protein
LOC_Os02g12050OsAffx.11996.1.S1_at10/112+6259006..6260059hypothetical protein
LOC_Os02g12060OsAffx.2581.1.S1_at11/112+6261071..6261623proteinase inhibitor Rgpi9, putative
LOC_Os02g12070OsAffx.11997.1.S1_at11/112+6265995..6267117expressed protein
LOC_Os02g12080OsAffx.11998.1.S1_s_at11/112+6268374..6269146expressed protein
LOC_Os02g12090Os.47959.1.S1_at5/112+6270427..6271229hypothetical protein
LOC_Os02g12100OsAffx.12711.2.S1_x_at11/112+6274686..6279131hypothetical protein
LOC_Os02g12100OsAffx.12711.2.S1_at11/112+6274686..6279131hypothetical protein
LOC_Os02g12100OsAffx.12711.4.S1_at2/112+6274686..6279131hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24926.1.S1_x_at--214--4953Chr02:445288..445312 (25 bp)
GCATACGCTTTAGATTATCTTCACA
LOC_Os02g01800
OsAffx.24926.1.S1_x_at--1023--434Chr02:445304..445328 (25 bp)
ATCTTCACAACCAGTGTGTATCCCC
LOC_Os02g01800
OsAffx.24926.1.S1_x_at--666--4375Chr02:445351..445375 (25 bp)
CCAAGCAATGTTCTTTTGGATCTTG
LOC_Os02g01800
OsAffx.24926.1.S1_x_at--509--2994Chr02:445357..445381 (25 bp)
AATGTTCTTTTGGATCTTGAAATGA
LOC_Os02g01800
OsAffx.24926.1.S1_x_at--45--1114Chr02:445393..445417 (25 bp)
AGTGACTTTGGGTTGGCAAGATTTA
LOC_Os02g01800
OsAffx.24926.1.S1_x_at--828--4253Chr02:445441..445465 (25 bp)
CCTGGTAACTCTACAAGTTTGGCTG
LOC_Os02g01800
OsAffx.24926.1.S1_x_at--332--8513Chr02:445443..445467 (25 bp)
TGGTAACTCTACAAGTTTGGCTGAC
LOC_Os02g01800
OsAffx.24926.1.S1_x_at--1051--10014Chr02:445693..445717 (25 bp)
TAGAGATATTAACTGGAAAGCGTCC
LOC_Os02g01800
OsAffx.24926.1.S1_x_at--828--8153Chr02:445707..445731 (25 bp)
GGAAAGCGTCCAACTGATGAAAAAT
LOC_Os02g01800
OsAffx.24926.1.S1_x_at--494--1633Chr02:445711..445735 (25 bp)
AGCGTCCAACTGATGAAAAATTCAA
LOC_Os02g01800
OsAffx.24926.1.S1_x_at--1051--614Chr02:445809..445833 (25 bp)
ATGCTACACAATGATTTGGATGGTG
LOC_Os02g01800
Target Sequence 
GCATACGCTTTAGATTATCTTCACAACCAGTGTGTATCCCCANTAATACATTGTGACATNAANCCAAGCAATGTTCTTTT
GGATCTTGAAATGANTGCATATGTCAGTGACTTTGGGTTGGCAAGATTTATGNGTGCTAATTCAACAGNAGCNCCTGGTA
ACTCTACAAGTTTGGCTGACNTAAAANGATCCATTGGATATATTGCACCNGAGTANGGAATGGGTGNGCAAATATCNACN
AAGGGTGATGTCTANAGCTATGGAGTGNTGTTGTTAGAGATATTAACTGGAAAGCGTCCAACTGATGAAAAATTCAANGA
TGGTNNGAGCCTCCANGANCNNGTNGATNCNGCATTTCCCCACAGAGTAACNGAGATTTTAGACCCCAANATGCTACACA
ATGATTTGGATGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24926.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis