Browse Element(s) Details


OsAffx.24926.3.S1_at

Description tigr:9630.m01089
TID=OsAffx.24926.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Hcr2-5D
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1204011/11Leucine Rich Repeat family protein
LOC_Os02g120301/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12010OsAffx.24926.2.S1_at11/112+6228456..6231985Leucine Rich Repeat family protein
LOC_Os02g12010OsAffx.24926.1.S1_x_at6/112+6228456..6231985Leucine Rich Repeat family protein
LOC_Os02g12020OsAffx.24203.1.S1_at11/112+6236706..6237184hypothetical protein
LOC_Os02g12030OsAffx.24926.1.S1_x_at11/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12030OsAffx.24926.3.S1_at1/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12040OsAffx.24926.3.S1_at11/112+6254346..6256373Leucine Rich Repeat family protein
LOC_Os02g12050OsAffx.11996.1.S1_at10/112+6259006..6260059hypothetical protein
LOC_Os02g12060OsAffx.2581.1.S1_at11/112+6261071..6261623proteinase inhibitor Rgpi9, putative
LOC_Os02g12070OsAffx.11997.1.S1_at11/112+6265995..6267117expressed protein
LOC_Os02g12080OsAffx.11998.1.S1_s_at11/112+6268374..6269146expressed protein
LOC_Os02g12090Os.47959.1.S1_at5/112+6270427..6271229hypothetical protein
LOC_Os02g12100OsAffx.12711.2.S1_x_at11/112+6274686..6279131hypothetical protein
LOC_Os02g12100OsAffx.12711.2.S1_at11/112+6274686..6279131hypothetical protein
LOC_Os02g12100OsAffx.12711.4.S1_at2/112+6274686..6279131hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009598biological_processdetection of pathogenic bacteria
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24926.3.S1_at--1001--5332Chr02:6254914..6254938 (25 bp)
GAAGTTTGCCTAGCTCGGTTGGTAA
LOC_Os02g12040
OsAffx.24926.3.S1_at--552--7071Chr02:6254893..6254917 (25 bp)
GTAATCTTGCCCCACAGCTTGAGTG
LOC_Os02g12040
OsAffx.24926.3.S1_at--79--991Chr02:6254810..6254834 (25 bp)
AGGAGTCTCACTATTCTGTATATGG
LOC_Os02g12040
OsAffx.24926.3.S1_at--451--2231Chr02:6254782..6254806 (25 bp)
ACAATCTGTTCAGTGGTCACATCCC
LOC_Os02g12040
OsAffx.24926.3.S1_at--179--4891Chr02:6254719..6254743 (25 bp)
GCTTTGCACTAAATGATCTCTTTGG
LOC_Os02g12040
OsAffx.24926.3.S1_at--715--8131Chr02:6254696..6254720 (25 bp)
GGACAAATTCCAGATTCCATTGGCA
LOC_Os02g12040
OsAffx.24926.3.S1_at--670--5151Chr02:6254674..6254698 (25 bp)
GCAACCTTGCCCAACTAATCGAGTT
LOC_Os02g12040
OsAffx.24926.3.S1_at--1105--471Chr02:6254527..6254551 (25 bp)
ATCTGAGCAGCATACGCGATCTAAT
LOC_Os02g12040
OsAffx.24926.3.S1_at--12--8511Chr02:6254481..6254505 (25 bp)
TGGACATATTCCATCTACCGTAGGA
LOC_Os02g12040
OsAffx.24926.3.S1_at--728--2631Chr02:6254447..6254471 (25 bp)
AACCTCTCTATTCTAAGCTTTGCAC
LOC_Os02g12040
OsAffx.24926.3.S1_at--262--4351Chr02:6254399..6254423 (25 bp)
CCAGAGTTCGTTGGCAATCTTGTCA
LOC_Os02g12040
Target Sequence 
GAAGTTTGCCTAGCTCGGTTGGTAATCTTGCCCCACAGCTTGAGTGGTTGTGGCTCAAGCAAAACAAAATTTATGGGACA
ATTCCCTCGGAGATTGGTAACCTTAGGAGTCTCACTATTCTGTATATGGATAACAATCTGTTCAGTGGTCACATCCCACC
TTCCATAGGAAATCTTAGTAATTTACAAGCTCTAAGCTTTGCACTAAATGATCTCTTTGGACAAATTCCAGATTCCATTG
GCAACCTTGCCCAACTAATCGAGTTTCATATAGATGGGAACAACTTTAGTGGGAGTATACCATCAAGTTTATGGCACTGG
AAGCATTTAGAGAAGCTTGATATCTCTGACAATTCATTTTTCGGATATATTCCACCTGCAGTAGGAAATCTGAGCAGCAT
ACGCGATCTAATATTTGCAAGAAATAATTTCTTTGGACATATTCCATCTACCGTAGGAAATTTGAGCAACCTCTCTATTC
TAAGCTTTGCACAGAATAATCTCTTTGGACATATTCCAGAGTTCGTTGGCAATCTTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24926.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis